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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-77643556-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=77643556&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 77643556,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_144777.3",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2051-702G>A",
"hgvs_p": null,
"transcript": "NM_144777.3",
"protein_id": "NP_659001.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 688,
"cds_start": null,
"cds_end": null,
"cds_length": 2067,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3194,
"mane_select": "ENST00000349847.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_144777.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2051-702G>A",
"hgvs_p": null,
"transcript": "ENST00000349847.4",
"protein_id": "ENSP00000302579.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 688,
"cds_start": null,
"cds_end": null,
"cds_length": 2067,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3194,
"mane_select": "NM_144777.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000349847.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1991-702G>A",
"hgvs_p": null,
"transcript": "ENST00000377246.7",
"protein_id": "ENSP00000366454.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 668,
"cds_start": null,
"cds_end": null,
"cds_length": 2007,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3081,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000377246.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2048-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856158.1",
"protein_id": "ENSP00000526217.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 687,
"cds_start": null,
"cds_end": null,
"cds_length": 2064,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3191,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856158.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2048-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856162.1",
"protein_id": "ENSP00000526221.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 687,
"cds_start": null,
"cds_end": null,
"cds_length": 2064,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3186,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856162.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2045-702G>A",
"hgvs_p": null,
"transcript": "ENST00000965443.1",
"protein_id": "ENSP00000635502.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 686,
"cds_start": null,
"cds_end": null,
"cds_length": 2061,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3180,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965443.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2030-702G>A",
"hgvs_p": null,
"transcript": "ENST00000965440.1",
"protein_id": "ENSP00000635499.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 681,
"cds_start": null,
"cds_end": null,
"cds_length": 2046,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3167,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965440.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.2012-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856139.1",
"protein_id": "ENSP00000526198.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 675,
"cds_start": null,
"cds_end": null,
"cds_length": 2028,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3533,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856139.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1991-702G>A",
"hgvs_p": null,
"transcript": "NM_003843.4",
"protein_id": "NP_003834.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 668,
"cds_start": null,
"cds_end": null,
"cds_length": 2007,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3134,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003843.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1991-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856144.1",
"protein_id": "ENSP00000526203.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 668,
"cds_start": null,
"cds_end": null,
"cds_length": 2007,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3173,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856144.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1988-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856183.1",
"protein_id": "ENSP00000526242.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 667,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 2393,
"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000856183.1"
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 31,
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"gene_symbol": "SCEL",
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"hgvs_c": "c.1985-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856156.1",
"protein_id": "ENSP00000526215.1",
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"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000856156.1"
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
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"hgvs_c": "c.1982-702G>A",
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"transcript": "ENST00000856170.1",
"protein_id": "ENSP00000526229.1",
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"cds_start": null,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 32,
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"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1979-702G>A",
"hgvs_p": null,
"transcript": "ENST00000965414.1",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1979-702G>A",
"hgvs_p": null,
"transcript": "ENST00000965424.1",
"protein_id": "ENSP00000635483.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000965424.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
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],
"exon_rank": null,
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"exon_count": 32,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1979-702G>A",
"hgvs_p": null,
"transcript": "ENST00000965431.1",
"protein_id": "ENSP00000635490.1",
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"feature": "ENST00000965431.1"
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1979-702G>A",
"hgvs_p": null,
"transcript": "ENST00000965441.1",
"protein_id": "ENSP00000635500.1",
"transcript_support_level": null,
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"cds_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000965441.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1943-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856188.1",
"protein_id": "ENSP00000526247.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 30,
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"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1934-702G>A",
"hgvs_p": null,
"transcript": "ENST00000856137.1",
"protein_id": "ENSP00000526196.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 30,
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"gene_symbol": "SCEL",
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},
{
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"consequences": [
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],
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"gene_symbol": "SCEL",
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"hgvs_c": "c.1928-702G>A",
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"transcript": "ENST00000856160.1",
"protein_id": "ENSP00000526219.1",
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000856160.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "SCEL",
"gene_hgnc_id": 10573,
"hgvs_c": "c.1925-702G>A",
"hgvs_p": null,
"transcript": "NM_001160706.2",
"protein_id": "NP_001154178.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 646,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001160706.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "SCEL",
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