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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-97302171-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=97302171&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 97302171,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000679496.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382683.1",
"protein_id": "NP_001369612.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 391,
"cds_start": -4,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4650,
"mane_select": "ENST00000679496.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "ENST00000679496.1",
"protein_id": "ENSP00000505596.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 391,
"cds_start": -4,
"cds_end": null,
"cds_length": 1176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4650,
"mane_select": "NM_001382683.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "ENST00000376673.8",
"protein_id": "ENSP00000365861.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 373,
"cds_start": -4,
"cds_end": null,
"cds_length": 1122,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4604,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "ENST00000345429.10",
"protein_id": "ENSP00000267287.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 367,
"cds_start": -4,
"cds_end": null,
"cds_length": 1104,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4669,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "ENST00000343600.9",
"protein_id": "ENSP00000344214.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 361,
"cds_start": -4,
"cds_end": null,
"cds_length": 1086,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4568,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "n.174+25762G>C",
"hgvs_p": null,
"transcript": "ENST00000469707.5",
"protein_id": "ENSP00000432422.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2574,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382669.1",
"protein_id": "NP_001369598.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 385,
"cds_start": -4,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4620,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382670.1",
"protein_id": "NP_001369599.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 385,
"cds_start": -4,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4745,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "ENST00000704364.1",
"protein_id": "ENSP00000515872.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 385,
"cds_start": -4,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5068,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382684.1",
"protein_id": "NP_001369613.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 383,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382671.1",
"protein_id": "NP_001369600.1",
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"aa_start": null,
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"cds_start": -4,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
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"gene_symbol": "MBNL2",
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"transcript": "NM_001382672.1",
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"feature": null
},
{
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"strand": true,
"consequences": [
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],
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"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
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"transcript": "NM_001382673.1",
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},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 2,
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"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
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"transcript": "ENST00000704373.1",
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},
{
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],
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"gene_symbol": "MBNL2",
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"transcript": "NM_001306070.2",
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},
{
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],
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"intron_rank": 2,
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"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
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},
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],
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"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
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"transcript": "NM_001382667.1",
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},
{
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],
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"exon_count": 9,
"intron_rank": 3,
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"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382668.1",
"protein_id": "NP_001369597.1",
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},
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],
"exon_rank": null,
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"exon_count": 9,
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"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
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"transcript": "NM_001382685.1",
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},
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],
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},
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],
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"gene_symbol": "MBNL2",
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},
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"strand": true,
"consequences": [
"intron_variant"
],
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"gene_symbol": "MBNL2",
"gene_hgnc_id": 16746,
"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_144778.4",
"protein_id": "NP_659002.1",
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"feature": null
},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "MBNL2",
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"hgvs_c": "c.174+25762G>C",
"hgvs_p": null,
"transcript": "NM_001382651.1",
"protein_id": "NP_001369580.1",
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