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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-98800361-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=98800361&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 98800361,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001366681.2",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 50,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5843G>A",
          "hgvs_p": "p.Arg1948Gln",
          "transcript": "NM_001366683.2",
          "protein_id": "NP_001353612.1",
          "transcript_support_level": null,
          "aa_start": 1948,
          "aa_end": null,
          "aa_length": 2092,
          "cds_start": 5843,
          "cds_end": null,
          "cds_length": 6279,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000682017.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366683.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 50,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5843G>A",
          "hgvs_p": "p.Arg1948Gln",
          "transcript": "ENST00000682017.1",
          "protein_id": "ENSP00000507034.1",
          "transcript_support_level": null,
          "aa_start": 1948,
          "aa_end": null,
          "aa_length": 2092,
          "cds_start": 5843,
          "cds_end": null,
          "cds_length": 6279,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001366683.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682017.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 52,
          "exon_rank_end": null,
          "exon_count": 55,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5948G>A",
          "hgvs_p": "p.Arg1983Gln",
          "transcript": "NM_001366681.2",
          "protein_id": "NP_001353610.1",
          "transcript_support_level": null,
          "aa_start": 1983,
          "aa_end": null,
          "aa_length": 2127,
          "cds_start": 5948,
          "cds_end": null,
          "cds_length": 6384,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366681.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5912G>A",
          "hgvs_p": "p.Arg1971Gln",
          "transcript": "NM_001366684.2",
          "protein_id": "NP_001353613.1",
          "transcript_support_level": null,
          "aa_start": 1971,
          "aa_end": null,
          "aa_length": 2115,
          "cds_start": 5912,
          "cds_end": null,
          "cds_length": 6348,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366684.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5879G>A",
          "hgvs_p": "p.Arg1960Gln",
          "transcript": "NM_001366682.2",
          "protein_id": "NP_001353611.1",
          "transcript_support_level": null,
          "aa_start": 1960,
          "aa_end": null,
          "aa_length": 2104,
          "cds_start": 5879,
          "cds_end": null,
          "cds_length": 6315,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366682.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5843G>A",
          "hgvs_p": "p.Arg1948Gln",
          "transcript": "ENST00000903387.1",
          "protein_id": "ENSP00000573446.1",
          "transcript_support_level": null,
          "aa_start": 1948,
          "aa_end": null,
          "aa_length": 2092,
          "cds_start": 5843,
          "cds_end": null,
          "cds_length": 6279,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903387.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5822G>A",
          "hgvs_p": "p.Arg1941Gln",
          "transcript": "NM_001366677.2",
          "protein_id": "NP_001353606.1",
          "transcript_support_level": null,
          "aa_start": 1941,
          "aa_end": null,
          "aa_length": 2085,
          "cds_start": 5822,
          "cds_end": null,
          "cds_length": 6258,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366677.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 50,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5810G>A",
          "hgvs_p": "p.Arg1937Gln",
          "transcript": "ENST00000448493.7",
          "protein_id": "ENSP00000401958.4",
          "transcript_support_level": 5,
          "aa_start": 1937,
          "aa_end": null,
          "aa_length": 2081,
          "cds_start": 5810,
          "cds_end": null,
          "cds_length": 6246,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000448493.7"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 53,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5921G>A",
          "hgvs_p": "p.Arg1974Gln",
          "transcript": "NM_001366678.2",
          "protein_id": "NP_001353607.1",
          "transcript_support_level": null,
          "aa_start": 1974,
          "aa_end": null,
          "aa_length": 2080,
          "cds_start": 5921,
          "cds_end": null,
          "cds_length": 6243,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366678.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 52,
          "exon_rank_end": null,
          "exon_count": 56,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5915G>A",
          "hgvs_p": "p.Arg1972Gln",
          "transcript": "ENST00000703211.1",
          "protein_id": "ENSP00000515238.1",
          "transcript_support_level": null,
          "aa_start": 1972,
          "aa_end": null,
          "aa_length": 2078,
          "cds_start": 5915,
          "cds_end": null,
          "cds_length": 6237,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000703211.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5786G>A",
          "hgvs_p": "p.Arg1929Gln",
          "transcript": "NM_001366679.2",
          "protein_id": "NP_001353608.1",
          "transcript_support_level": null,
          "aa_start": 1929,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 5786,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366679.2"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5786G>A",
          "hgvs_p": "p.Arg1929Gln",
          "transcript": "ENST00000903390.1",
          "protein_id": "ENSP00000573449.1",
          "transcript_support_level": null,
          "aa_start": 1929,
          "aa_end": null,
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          "cds_start": 5786,
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          "cds_length": 6222,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 53,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5888G>A",
          "hgvs_p": "p.Arg1963Gln",
          "transcript": "NM_015296.3",
          "protein_id": "NP_056111.1",
          "transcript_support_level": null,
          "aa_start": 1963,
          "aa_end": null,
          "aa_length": 2069,
          "cds_start": 5888,
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          "cds_length": 6210,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "NM_015296.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 53,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5888G>A",
          "hgvs_p": "p.Arg1963Gln",
          "transcript": "ENST00000652315.1",
          "protein_id": "ENSP00000498761.1",
          "transcript_support_level": null,
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          "cds_start": 5888,
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        },
        {
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5885G>A",
          "hgvs_p": "p.Arg1962Gln",
          "transcript": "NM_001130048.2",
          "protein_id": "NP_001123520.1",
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          "aa_end": null,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001130048.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5885G>A",
          "hgvs_p": "p.Arg1962Gln",
          "transcript": "ENST00000376460.5",
          "protein_id": "ENSP00000365643.1",
          "transcript_support_level": 5,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
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          "consequences": [
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          ],
          "exon_rank": 50,
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          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5750G>A",
          "hgvs_p": "p.Arg1917Gln",
          "transcript": "NM_001366680.2",
          "protein_id": "NP_001353609.1",
          "transcript_support_level": null,
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        {
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          ],
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5750G>A",
          "hgvs_p": "p.Arg1917Gln",
          "transcript": "ENST00000449796.6",
          "protein_id": "ENSP00000403528.2",
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5852G>A",
          "hgvs_p": "p.Arg1951Gln",
          "transcript": "NM_001366676.2",
          "protein_id": "NP_001353605.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001366676.2"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 51,
          "exon_rank_end": null,
          "exon_count": 55,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5846G>A",
          "hgvs_p": "p.Arg1949Gln",
          "transcript": "ENST00000703210.1",
          "protein_id": "ENSP00000515237.1",
          "transcript_support_level": null,
          "aa_start": 1949,
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          "cdna_start": null,
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      "clinvar_classification": "Uncertain significance",
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      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  "message": null
}