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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-98805017-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=98805017&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 98805017,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001366681.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5707C>G",
"hgvs_p": "p.Arg1903Gly",
"transcript": "NM_001366683.2",
"protein_id": "NP_001353612.1",
"transcript_support_level": null,
"aa_start": 1903,
"aa_end": null,
"aa_length": 2092,
"cds_start": 5707,
"cds_end": null,
"cds_length": 6279,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000682017.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366683.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5707C>G",
"hgvs_p": "p.Arg1903Gly",
"transcript": "ENST00000682017.1",
"protein_id": "ENSP00000507034.1",
"transcript_support_level": null,
"aa_start": 1903,
"aa_end": null,
"aa_length": 2092,
"cds_start": 5707,
"cds_end": null,
"cds_length": 6279,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001366683.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000682017.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 51,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5812C>G",
"hgvs_p": "p.Arg1938Gly",
"transcript": "NM_001366681.2",
"protein_id": "NP_001353610.1",
"transcript_support_level": null,
"aa_start": 1938,
"aa_end": null,
"aa_length": 2127,
"cds_start": 5812,
"cds_end": null,
"cds_length": 6384,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366681.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5776C>G",
"hgvs_p": "p.Arg1926Gly",
"transcript": "NM_001366684.2",
"protein_id": "NP_001353613.1",
"transcript_support_level": null,
"aa_start": 1926,
"aa_end": null,
"aa_length": 2115,
"cds_start": 5776,
"cds_end": null,
"cds_length": 6348,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366684.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5743C>G",
"hgvs_p": "p.Arg1915Gly",
"transcript": "NM_001366682.2",
"protein_id": "NP_001353611.1",
"transcript_support_level": null,
"aa_start": 1915,
"aa_end": null,
"aa_length": 2104,
"cds_start": 5743,
"cds_end": null,
"cds_length": 6315,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366682.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5707C>G",
"hgvs_p": "p.Arg1903Gly",
"transcript": "ENST00000903387.1",
"protein_id": "ENSP00000573446.1",
"transcript_support_level": null,
"aa_start": 1903,
"aa_end": null,
"aa_length": 2092,
"cds_start": 5707,
"cds_end": null,
"cds_length": 6279,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903387.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5686C>G",
"hgvs_p": "p.Arg1896Gly",
"transcript": "NM_001366677.2",
"protein_id": "NP_001353606.1",
"transcript_support_level": null,
"aa_start": 1896,
"aa_end": null,
"aa_length": 2085,
"cds_start": 5686,
"cds_end": null,
"cds_length": 6258,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366677.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5674C>G",
"hgvs_p": "p.Arg1892Gly",
"transcript": "ENST00000448493.7",
"protein_id": "ENSP00000401958.4",
"transcript_support_level": 5,
"aa_start": 1892,
"aa_end": null,
"aa_length": 2081,
"cds_start": 5674,
"cds_end": null,
"cds_length": 6246,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000448493.7"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 52,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5785C>G",
"hgvs_p": "p.Arg1929Gly",
"transcript": "NM_001366678.2",
"protein_id": "NP_001353607.1",
"transcript_support_level": null,
"aa_start": 1929,
"aa_end": null,
"aa_length": 2080,
"cds_start": 5785,
"cds_end": null,
"cds_length": 6243,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366678.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 51,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5779C>G",
"hgvs_p": "p.Arg1927Gly",
"transcript": "ENST00000703211.1",
"protein_id": "ENSP00000515238.1",
"transcript_support_level": null,
"aa_start": 1927,
"aa_end": null,
"aa_length": 2078,
"cds_start": 5779,
"cds_end": null,
"cds_length": 6237,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000703211.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5650C>G",
"hgvs_p": "p.Arg1884Gly",
"transcript": "NM_001366679.2",
"protein_id": "NP_001353608.1",
"transcript_support_level": null,
"aa_start": 1884,
"aa_end": null,
"aa_length": 2073,
"cds_start": 5650,
"cds_end": null,
"cds_length": 6222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366679.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5650C>G",
"hgvs_p": "p.Arg1884Gly",
"transcript": "ENST00000903390.1",
"protein_id": "ENSP00000573449.1",
"transcript_support_level": null,
"aa_start": 1884,
"aa_end": null,
"aa_length": 2073,
"cds_start": 5650,
"cds_end": null,
"cds_length": 6222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000903390.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 52,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5752C>G",
"hgvs_p": "p.Arg1918Gly",
"transcript": "NM_015296.3",
"protein_id": "NP_056111.1",
"transcript_support_level": null,
"aa_start": 1918,
"aa_end": null,
"aa_length": 2069,
"cds_start": 5752,
"cds_end": null,
"cds_length": 6210,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015296.3"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 52,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5752C>G",
"hgvs_p": "p.Arg1918Gly",
"transcript": "ENST00000652315.1",
"protein_id": "ENSP00000498761.1",
"transcript_support_level": null,
"aa_start": 1918,
"aa_end": null,
"aa_length": 2069,
"cds_start": 5752,
"cds_end": null,
"cds_length": 6210,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000652315.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 52,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5749C>G",
"hgvs_p": "p.Arg1917Gly",
"transcript": "NM_001130048.2",
"protein_id": "NP_001123520.1",
"transcript_support_level": null,
"aa_start": 1917,
"aa_end": null,
"aa_length": 2068,
"cds_start": 5749,
"cds_end": null,
"cds_length": 6207,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001130048.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 52,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5749C>G",
"hgvs_p": "p.Arg1917Gly",
"transcript": "ENST00000376460.5",
"protein_id": "ENSP00000365643.1",
"transcript_support_level": 5,
"aa_start": 1917,
"aa_end": null,
"aa_length": 2068,
"cds_start": 5749,
"cds_end": null,
"cds_length": 6207,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000376460.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5614C>G",
"hgvs_p": "p.Arg1872Gly",
"transcript": "NM_001366680.2",
"protein_id": "NP_001353609.1",
"transcript_support_level": null,
"aa_start": 1872,
"aa_end": null,
"aa_length": 2061,
"cds_start": 5614,
"cds_end": null,
"cds_length": 6186,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366680.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 49,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5614C>G",
"hgvs_p": "p.Arg1872Gly",
"transcript": "ENST00000449796.6",
"protein_id": "ENSP00000403528.2",
"transcript_support_level": 5,
"aa_start": 1872,
"aa_end": null,
"aa_length": 2061,
"cds_start": 5614,
"cds_end": null,
"cds_length": 6186,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000449796.6"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 51,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5716C>G",
"hgvs_p": "p.Arg1906Gly",
"transcript": "NM_001366676.2",
"protein_id": "NP_001353605.1",
"transcript_support_level": null,
"aa_start": 1906,
"aa_end": null,
"aa_length": 2057,
"cds_start": 5716,
"cds_end": null,
"cds_length": 6174,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366676.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 50,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5710C>G",
"hgvs_p": "p.Arg1904Gly",
"transcript": "ENST00000703210.1",
"protein_id": "ENSP00000515237.1",
"transcript_support_level": null,
"aa_start": 1904,
"aa_end": null,
"aa_length": 2055,
"cds_start": 5710,
"cds_end": null,
"cds_length": 6168,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000703210.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 51,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5683C>G",
"hgvs_p": "p.Arg1895Gly",
"transcript": "NM_001318849.2",
"protein_id": "NP_001305778.1",
"transcript_support_level": null,
"aa_start": 1895,
"aa_end": null,
"aa_length": 2046,
"cds_start": 5683,
"cds_end": null,
"cds_length": 6141,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318849.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 48,
"exon_rank_end": null,
"exon_count": 52,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.5542C>G",
"hgvs_p": "p.Arg1848Gly",
"transcript": "ENST00000903388.1",
"protein_id": "ENSP00000573447.1",
"transcript_support_level": null,
"aa_start": 1848,
"aa_end": null,
"aa_length": 2037,
"cds_start": 5542,
"cds_end": null,
"cds_length": 6114,
"cdna_start": null,
"cdna_end": null,
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}