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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 13-98824481-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=98824481&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "13",
      "pos": 98824481,
      "ref": "C",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001366681.2",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5047G>T",
          "hgvs_p": "p.Ala1683Ser",
          "transcript": "NM_001366683.2",
          "protein_id": "NP_001353612.1",
          "transcript_support_level": null,
          "aa_start": 1683,
          "aa_end": null,
          "aa_length": 2092,
          "cds_start": 5047,
          "cds_end": null,
          "cds_length": 6279,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000682017.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366683.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5047G>T",
          "hgvs_p": "p.Ala1683Ser",
          "transcript": "ENST00000682017.1",
          "protein_id": "ENSP00000507034.1",
          "transcript_support_level": null,
          "aa_start": 1683,
          "aa_end": null,
          "aa_length": 2092,
          "cds_start": 5047,
          "cds_end": null,
          "cds_length": 6279,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001366683.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682017.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 55,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5116G>T",
          "hgvs_p": "p.Ala1706Ser",
          "transcript": "NM_001366681.2",
          "protein_id": "NP_001353610.1",
          "transcript_support_level": null,
          "aa_start": 1706,
          "aa_end": null,
          "aa_length": 2127,
          "cds_start": 5116,
          "cds_end": null,
          "cds_length": 6384,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366681.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5116G>T",
          "hgvs_p": "p.Ala1706Ser",
          "transcript": "NM_001366684.2",
          "protein_id": "NP_001353613.1",
          "transcript_support_level": null,
          "aa_start": 1706,
          "aa_end": null,
          "aa_length": 2115,
          "cds_start": 5116,
          "cds_end": null,
          "cds_length": 6348,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366684.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5047G>T",
          "hgvs_p": "p.Ala1683Ser",
          "transcript": "NM_001366682.2",
          "protein_id": "NP_001353611.1",
          "transcript_support_level": null,
          "aa_start": 1683,
          "aa_end": null,
          "aa_length": 2104,
          "cds_start": 5047,
          "cds_end": null,
          "cds_length": 6315,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366682.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5047G>T",
          "hgvs_p": "p.Ala1683Ser",
          "transcript": "ENST00000903387.1",
          "protein_id": "ENSP00000573446.1",
          "transcript_support_level": null,
          "aa_start": 1683,
          "aa_end": null,
          "aa_length": 2092,
          "cds_start": 5047,
          "cds_end": null,
          "cds_length": 6279,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903387.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.4990G>T",
          "hgvs_p": "p.Ala1664Ser",
          "transcript": "NM_001366677.2",
          "protein_id": "NP_001353606.1",
          "transcript_support_level": null,
          "aa_start": 1664,
          "aa_end": null,
          "aa_length": 2085,
          "cds_start": 4990,
          "cds_end": null,
          "cds_length": 6258,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366677.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5014G>T",
          "hgvs_p": "p.Ala1672Ser",
          "transcript": "ENST00000448493.7",
          "protein_id": "ENSP00000401958.4",
          "transcript_support_level": 5,
          "aa_start": 1672,
          "aa_end": null,
          "aa_length": 2081,
          "cds_start": 5014,
          "cds_end": null,
          "cds_length": 6246,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000448493.7"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5083G>T",
          "hgvs_p": "p.Ala1695Ser",
          "transcript": "NM_001366678.2",
          "protein_id": "NP_001353607.1",
          "transcript_support_level": null,
          "aa_start": 1695,
          "aa_end": null,
          "aa_length": 2080,
          "cds_start": 5083,
          "cds_end": null,
          "cds_length": 6243,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366678.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 56,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5083G>T",
          "hgvs_p": "p.Ala1695Ser",
          "transcript": "ENST00000703211.1",
          "protein_id": "ENSP00000515238.1",
          "transcript_support_level": null,
          "aa_start": 1695,
          "aa_end": null,
          "aa_length": 2078,
          "cds_start": 5083,
          "cds_end": null,
          "cds_length": 6237,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000703211.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.4954G>T",
          "hgvs_p": "p.Ala1652Ser",
          "transcript": "NM_001366679.2",
          "protein_id": "NP_001353608.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 4954,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366679.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 54,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.4954G>T",
          "hgvs_p": "p.Ala1652Ser",
          "transcript": "ENST00000903390.1",
          "protein_id": "ENSP00000573449.1",
          "transcript_support_level": null,
          "aa_start": 1652,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 4954,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903390.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5050G>T",
          "hgvs_p": "p.Ala1684Ser",
          "transcript": "NM_015296.3",
          "protein_id": "NP_056111.1",
          "transcript_support_level": null,
          "aa_start": 1684,
          "aa_end": null,
          "aa_length": 2069,
          "cds_start": 5050,
          "cds_end": null,
          "cds_length": 6210,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015296.3"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5050G>T",
          "hgvs_p": "p.Ala1684Ser",
          "transcript": "ENST00000652315.1",
          "protein_id": "ENSP00000498761.1",
          "transcript_support_level": null,
          "aa_start": 1684,
          "aa_end": null,
          "aa_length": 2069,
          "cds_start": 5050,
          "cds_end": null,
          "cds_length": 6210,
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          "feature": "ENST00000652315.1"
        },
        {
          "aa_ref": "A",
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          "strand": false,
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          ],
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          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5047G>T",
          "hgvs_p": "p.Ala1683Ser",
          "transcript": "NM_001130048.2",
          "protein_id": "NP_001123520.1",
          "transcript_support_level": null,
          "aa_start": 1683,
          "aa_end": null,
          "aa_length": 2068,
          "cds_start": 5047,
          "cds_end": null,
          "cds_length": 6207,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001130048.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 46,
          "exon_rank_end": null,
          "exon_count": 57,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5047G>T",
          "hgvs_p": "p.Ala1683Ser",
          "transcript": "ENST00000376460.5",
          "protein_id": "ENSP00000365643.1",
          "transcript_support_level": 5,
          "aa_start": 1683,
          "aa_end": null,
          "aa_length": 2068,
          "cds_start": 5047,
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          "cds_length": 6207,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000376460.5"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.4954G>T",
          "hgvs_p": "p.Ala1652Ser",
          "transcript": "NM_001366680.2",
          "protein_id": "NP_001353609.1",
          "transcript_support_level": null,
          "aa_start": 1652,
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          "cds_start": 4954,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001366680.2"
        },
        {
          "aa_ref": "A",
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          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.4954G>T",
          "hgvs_p": "p.Ala1652Ser",
          "transcript": "ENST00000449796.6",
          "protein_id": "ENSP00000403528.2",
          "transcript_support_level": 5,
          "aa_start": 1652,
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          "cds_start": 4954,
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          "cds_length": 6186,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000449796.6"
        },
        {
          "aa_ref": "A",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 56,
          "intron_rank": null,
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          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5014G>T",
          "hgvs_p": "p.Ala1672Ser",
          "transcript": "NM_001366676.2",
          "protein_id": "NP_001353605.1",
          "transcript_support_level": null,
          "aa_start": 1672,
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          "aa_length": 2057,
          "cds_start": 5014,
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          "cds_length": 6174,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366676.2"
        },
        {
          "aa_ref": "A",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 55,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9",
          "gene_hgnc_id": 14132,
          "hgvs_c": "c.5014G>T",
          "hgvs_p": "p.Ala1672Ser",
          "transcript": "ENST00000703210.1",
          "protein_id": "ENSP00000515237.1",
          "transcript_support_level": null,
          "aa_start": 1672,
          "aa_end": null,
          "aa_length": 2055,
          "cds_start": 5014,
          "cds_end": null,
          "cds_length": 6168,
          "cdna_start": null,
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          "transcript_support_level": 3,
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          "biotype": "pseudogene",
          "feature": "ENST00000439367.2"
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        {
          "aa_ref": null,
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9-AS1",
          "gene_hgnc_id": 40672,
          "hgvs_c": "n.294+7118C>A",
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          "transcript": "ENST00000789435.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
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          "cds_length": null,
          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000789435.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "DOCK9-AS1",
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          "hgvs_c": "n.293+7118C>A",
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          "transcript": "ENST00000789436.1",
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          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000789436.1"
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      ],
      "gene_symbol": "DOCK9",
      "gene_hgnc_id": 14132,
      "dbsnp": "rs762671584",
      "frequency_reference_population": 0.000013145614,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 2,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": 0.0000131456,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": 2,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.2972202003002167,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.07,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1079,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.34,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 3.133,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 1,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_by_gene": [
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001366681.2",
          "gene_symbol": "DOCK9",
          "hgnc_id": 14132,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.5116G>T",
          "hgvs_p": "p.Ala1706Ser"
        },
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000439367.2",
          "gene_symbol": "DOCK9-AS1",
          "hgnc_id": 40672,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.211+7118C>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}