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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 13-98923314-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=13&pos=98923314&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "13",
"pos": 98923314,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000682017.1",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001366683.2",
"protein_id": "NP_001353612.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 2092,
"cds_start": 474,
"cds_end": null,
"cds_length": 6279,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 7631,
"mane_select": "ENST00000682017.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "ENST00000682017.1",
"protein_id": "ENSP00000507034.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 2092,
"cds_start": 474,
"cds_end": null,
"cds_length": 6279,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 7631,
"mane_select": "NM_001366683.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.477C>T",
"hgvs_p": "p.Val159Val",
"transcript": "ENST00000427887.2",
"protein_id": "ENSP00000413781.2",
"transcript_support_level": 1,
"aa_start": 159,
"aa_end": null,
"aa_length": 1254,
"cds_start": 477,
"cds_end": null,
"cds_length": 3765,
"cdna_start": 751,
"cdna_end": null,
"cdna_length": 4176,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 55,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001366681.2",
"protein_id": "NP_001353610.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 2127,
"cds_start": 474,
"cds_end": null,
"cds_length": 6384,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 7736,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001366684.2",
"protein_id": "NP_001353613.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 2115,
"cds_start": 474,
"cds_end": null,
"cds_length": 6348,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 7700,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001366682.2",
"protein_id": "NP_001353611.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 2104,
"cds_start": 474,
"cds_end": null,
"cds_length": 6315,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 7667,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.510C>T",
"hgvs_p": "p.Val170Val",
"transcript": "NM_001366677.2",
"protein_id": "NP_001353606.1",
"transcript_support_level": null,
"aa_start": 170,
"aa_end": null,
"aa_length": 2085,
"cds_start": 510,
"cds_end": null,
"cds_length": 6258,
"cdna_start": 687,
"cdna_end": null,
"cdna_length": 7632,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 53,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.510C>T",
"hgvs_p": "p.Val170Val",
"transcript": "ENST00000448493.7",
"protein_id": "ENSP00000401958.4",
"transcript_support_level": 5,
"aa_start": 170,
"aa_end": null,
"aa_length": 2081,
"cds_start": 510,
"cds_end": null,
"cds_length": 6246,
"cdna_start": 954,
"cdna_end": null,
"cdna_length": 7887,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.510C>T",
"hgvs_p": "p.Val170Val",
"transcript": "NM_001366678.2",
"protein_id": "NP_001353607.1",
"transcript_support_level": null,
"aa_start": 170,
"aa_end": null,
"aa_length": 2080,
"cds_start": 510,
"cds_end": null,
"cds_length": 6243,
"cdna_start": 687,
"cdna_end": null,
"cdna_length": 7739,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.510C>T",
"hgvs_p": "p.Val170Val",
"transcript": "ENST00000703211.1",
"protein_id": "ENSP00000515238.1",
"transcript_support_level": null,
"aa_start": 170,
"aa_end": null,
"aa_length": 2078,
"cds_start": 510,
"cds_end": null,
"cds_length": 6237,
"cdna_start": 954,
"cdna_end": null,
"cdna_length": 8000,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001366679.2",
"protein_id": "NP_001353608.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 2073,
"cds_start": 474,
"cds_end": null,
"cds_length": 6222,
"cdna_start": 629,
"cdna_end": null,
"cdna_length": 7574,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.477C>T",
"hgvs_p": "p.Val159Val",
"transcript": "NM_015296.3",
"protein_id": "NP_056111.1",
"transcript_support_level": null,
"aa_start": 159,
"aa_end": null,
"aa_length": 2069,
"cds_start": 477,
"cds_end": null,
"cds_length": 6210,
"cdna_start": 820,
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"cdna_length": 7872,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.477C>T",
"hgvs_p": "p.Val159Val",
"transcript": "ENST00000652315.1",
"protein_id": "ENSP00000498761.1",
"transcript_support_level": null,
"aa_start": 159,
"aa_end": null,
"aa_length": 2069,
"cds_start": 477,
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"cds_length": 6210,
"cdna_start": 532,
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"cdna_length": 7523,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": null,
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"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001130048.2",
"protein_id": "NP_001123520.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
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"intron_rank": null,
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"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "ENST00000376460.5",
"protein_id": "ENSP00000365643.1",
"transcript_support_level": 5,
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"aa_end": null,
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"cds_start": 474,
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"cdna_start": 555,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
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"exon_count": 53,
"intron_rank": null,
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"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001366680.2",
"protein_id": "NP_001353609.1",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
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"exon_count": 53,
"intron_rank": null,
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"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "ENST00000449796.6",
"protein_id": "ENSP00000403528.2",
"transcript_support_level": 5,
"aa_start": 158,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 56,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.510C>T",
"hgvs_p": "p.Val170Val",
"transcript": "NM_001366676.2",
"protein_id": "NP_001353605.1",
"transcript_support_level": null,
"aa_start": 170,
"aa_end": null,
"aa_length": 2057,
"cds_start": 510,
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"mane_select": null,
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"biotype": null,
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},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
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"intron_rank": null,
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"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.510C>T",
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"transcript": "ENST00000703210.1",
"protein_id": "ENSP00000515237.1",
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},
{
"aa_ref": "V",
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": 5,
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"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.477C>T",
"hgvs_p": "p.Val159Val",
"transcript": "NM_001318849.2",
"protein_id": "NP_001305778.1",
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"aa_start": 159,
"aa_end": null,
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"mane_select": null,
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"feature": null
},
{
"aa_ref": "V",
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
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"intron_rank": null,
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"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.261C>T",
"hgvs_p": "p.Val87Val",
"transcript": "ENST00000703216.1",
"protein_id": "ENSP00000515240.1",
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"aa_start": 87,
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"cdna_start": 431,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.477C>T",
"hgvs_p": "p.Val159Val",
"transcript": "NM_001130049.2",
"protein_id": "NP_001123521.1",
"transcript_support_level": null,
"aa_start": 159,
"aa_end": null,
"aa_length": 1254,
"cds_start": 477,
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"cds_length": 3765,
"cdna_start": 820,
"cdna_end": null,
"cdna_length": 4267,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DOCK9",
"gene_hgnc_id": 14132,
"hgvs_c": "c.474C>T",
"hgvs_p": "p.Val158Val",
"transcript": "NM_001130050.2",
"protein_id": "NP_001123522.1",
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"aa_start": 158,
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