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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-102042277-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=102042277&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "14",
      "pos": 102042277,
      "ref": "A",
      "alt": "G",
      "effect": "synonymous_variant",
      "transcript": "ENST00000360184.10",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 78,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "c.12264A>G",
          "hgvs_p": "p.Val4088Val",
          "transcript": "NM_001376.5",
          "protein_id": "NP_001367.2",
          "transcript_support_level": null,
          "aa_start": 4088,
          "aa_end": null,
          "aa_length": 4646,
          "cds_start": 12264,
          "cds_end": null,
          "cds_length": 13941,
          "cdna_start": 12383,
          "cdna_end": null,
          "cdna_length": 19940,
          "mane_select": "ENST00000360184.10",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 78,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "c.12264A>G",
          "hgvs_p": "p.Val4088Val",
          "transcript": "ENST00000360184.10",
          "protein_id": "ENSP00000348965.4",
          "transcript_support_level": 1,
          "aa_start": 4088,
          "aa_end": null,
          "aa_length": 4646,
          "cds_start": 12264,
          "cds_end": null,
          "cds_length": 13941,
          "cdna_start": 12383,
          "cdna_end": null,
          "cdna_length": 19940,
          "mane_select": "NM_001376.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 77,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "c.12264A>G",
          "hgvs_p": "p.Val4088Val",
          "transcript": "ENST00000681574.1",
          "protein_id": "ENSP00000505523.1",
          "transcript_support_level": null,
          "aa_start": 4088,
          "aa_end": null,
          "aa_length": 4672,
          "cds_start": 12264,
          "cds_end": null,
          "cds_length": 14019,
          "cdna_start": 12383,
          "cdna_end": null,
          "cdna_length": 14519,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 78,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "c.12264A>G",
          "hgvs_p": "p.Val4088Val",
          "transcript": "ENST00000679720.1",
          "protein_id": "ENSP00000505938.1",
          "transcript_support_level": null,
          "aa_start": 4088,
          "aa_end": null,
          "aa_length": 4637,
          "cds_start": 12264,
          "cds_end": null,
          "cds_length": 13914,
          "cdna_start": 12383,
          "cdna_end": null,
          "cdna_length": 19903,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 78,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "c.12264A>G",
          "hgvs_p": "p.Val4088Val",
          "transcript": "ENST00000644881.2",
          "protein_id": "ENSP00000495022.2",
          "transcript_support_level": null,
          "aa_start": 4088,
          "aa_end": null,
          "aa_length": 4604,
          "cds_start": 12264,
          "cds_end": null,
          "cds_length": 13815,
          "cdna_start": 12383,
          "cdna_end": null,
          "cdna_length": 14291,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 66,
          "exon_rank_end": null,
          "exon_count": 77,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "c.12117A>G",
          "hgvs_p": "p.Val4039Val",
          "transcript": "ENST00000645149.2",
          "protein_id": "ENSP00000495944.2",
          "transcript_support_level": null,
          "aa_start": 4039,
          "aa_end": null,
          "aa_length": 4597,
          "cds_start": 12117,
          "cds_end": null,
          "cds_length": 13794,
          "cdna_start": 12236,
          "cdna_end": null,
          "cdna_length": 14134,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "splice_region_variant",
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.816A>G",
          "hgvs_p": null,
          "transcript": "ENST00000556139.2",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 818,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.1397A>G",
          "hgvs_p": null,
          "transcript": "ENST00000556499.3",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1416,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.2218A>G",
          "hgvs_p": null,
          "transcript": "ENST00000643437.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4773,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.57A>G",
          "hgvs_p": null,
          "transcript": "ENST00000643591.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2950,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.2093A>G",
          "hgvs_p": null,
          "transcript": "ENST00000643829.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4050,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.400A>G",
          "hgvs_p": null,
          "transcript": "ENST00000644239.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2298,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.2383A>G",
          "hgvs_p": null,
          "transcript": "ENST00000644794.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4842,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.515A>G",
          "hgvs_p": null,
          "transcript": "ENST00000644888.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 968,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 65,
          "exon_rank_end": null,
          "exon_count": 76,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.*115A>G",
          "hgvs_p": null,
          "transcript": "ENST00000645039.2",
          "protein_id": "ENSP00000495220.2",
          "transcript_support_level": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 14031,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.510A>G",
          "hgvs_p": null,
          "transcript": "ENST00000645085.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2397,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.2927A>G",
          "hgvs_p": null,
          "transcript": "ENST00000645697.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3547,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.1505A>G",
          "hgvs_p": null,
          "transcript": "ENST00000647204.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 4235,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 44,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.5818A>G",
          "hgvs_p": null,
          "transcript": "ENST00000647366.1",
          "protein_id": null,
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          "aa_start": null,
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          "cdna_start": null,
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          "cdna_length": 7322,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 71,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.12264A>G",
          "hgvs_p": null,
          "transcript": "ENST00000679486.1",
          "protein_id": "ENSP00000506688.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 13534,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 67,
          "exon_rank_end": null,
          "exon_count": 78,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DYNC1H1",
          "gene_hgnc_id": 2961,
          "hgvs_c": "n.*3346A>G",
          "hgvs_p": null,
          "transcript": "ENST00000679910.1",
          "protein_id": "ENSP00000506521.1",
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        {
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        {
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      ],
      "gene_symbol": "DYNC1H1",
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      "dbsnp": "rs1041126638",
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      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.5099999904632568,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0.11999999731779099,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.51,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.284,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.12,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -3,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM2,BP4_Strong,BP7",
      "acmg_by_gene": [
        {
          "score": -3,
          "benign_score": 5,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP7"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000360184.10",
          "gene_symbol": "DYNC1H1",
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          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.12264A>G",
          "hgvs_p": "p.Val4088Val"
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        {
          "score": -2,
          "benign_score": 4,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Strong"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000553701.1",
          "gene_symbol": "ENSG00000293472",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.347-5508T>C",
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        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}