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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-103465639-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=103465639&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "14",
      "pos": 103465639,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001128918.3",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "NM_001128918.3",
          "protein_id": "NP_001122390.2",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 753,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2262,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000429436.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001128918.3"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000429436.7",
          "protein_id": "ENSP00000411397.2",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 753,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2262,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001128918.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000429436.7"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000556744.2",
          "protein_id": "ENSP00000451623.2",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 789,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2370,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000556744.2"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.692A>G",
          "hgvs_p": "p.Lys231Arg",
          "transcript": "ENST00000416682.6",
          "protein_id": "ENSP00000408092.2",
          "transcript_support_level": 1,
          "aa_start": 231,
          "aa_end": null,
          "aa_length": 752,
          "cds_start": 692,
          "cds_end": null,
          "cds_length": 2259,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000416682.6"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000553942.5",
          "protein_id": "ENSP00000450772.1",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 744,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2235,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000553942.5"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000303622.13",
          "protein_id": "ENSP00000303698.9",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 729,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2190,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000303622.13"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000216288.11",
          "protein_id": "ENSP00000216288.7",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 713,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2142,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000216288.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 7,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.541-333A>G",
          "hgvs_p": null,
          "transcript": "ENST00000440884.7",
          "protein_id": "ENSP00000402104.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 659,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1980,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000440884.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "n.1238A>G",
          "hgvs_p": null,
          "transcript": "ENST00000558223.6",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000558223.6"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000873450.1",
          "protein_id": "ENSP00000543509.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 805,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2418,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000873450.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000678179.1",
          "protein_id": "ENSP00000503689.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 796,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2391,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000678179.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000969206.1",
          "protein_id": "ENSP00000639265.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 795,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2388,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000969206.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000676897.1",
          "protein_id": "ENSP00000503095.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 790,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2373,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000676897.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000679330.1",
          "protein_id": "ENSP00000503975.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 781,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2346,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000679330.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000969207.1",
          "protein_id": "ENSP00000639266.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 780,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2343,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000969207.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.692A>G",
          "hgvs_p": "p.Lys231Arg",
          "transcript": "ENST00000335102.9",
          "protein_id": "ENSP00000335347.5",
          "transcript_support_level": 5,
          "aa_start": 231,
          "aa_end": null,
          "aa_length": 776,
          "cds_start": 692,
          "cds_end": null,
          "cds_length": 2331,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000335102.9"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.716A>G",
          "hgvs_p": "p.Lys239Arg",
          "transcript": "ENST00000969211.1",
          "protein_id": "ENSP00000639270.1",
          "transcript_support_level": null,
          "aa_start": 239,
          "aa_end": null,
          "aa_length": 775,
          "cds_start": 716,
          "cds_end": null,
          "cds_length": 2328,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000969211.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000969210.1",
          "protein_id": "ENSP00000639269.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 774,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2325,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000969210.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg",
          "transcript": "ENST00000969215.1",
          "protein_id": "ENSP00000639274.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 770,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 2313,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000969215.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MARK3",
          "gene_hgnc_id": 6897,
          "hgvs_c": "c.716A>G",
          "hgvs_p": "p.Lys239Arg",
          "transcript": "ENST00000873455.1",
          "protein_id": "ENSP00000543514.1",
          "transcript_support_level": null,
          "aa_start": 239,
          "aa_end": null,
          "aa_length": 769,
          "cds_start": 716,
          "cds_end": null,
          "cds_length": 2310,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001128918.3",
          "gene_symbol": "MARK3",
          "hgnc_id": 6897,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "Unknown,AR",
          "hgvs_c": "c.623A>G",
          "hgvs_p": "p.Lys208Arg"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}