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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-103739853-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=103739853&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 103739853,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_015316.3",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2563C>A",
"hgvs_p": "p.Pro855Thr",
"transcript": "NM_015316.3",
"protein_id": "NP_056131.2",
"transcript_support_level": null,
"aa_start": 855,
"aa_end": null,
"aa_length": 1090,
"cds_start": 2563,
"cds_end": null,
"cds_length": 3273,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000202556.14",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015316.3"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2563C>A",
"hgvs_p": "p.Pro855Thr",
"transcript": "ENST00000202556.14",
"protein_id": "ENSP00000202556.9",
"transcript_support_level": 1,
"aa_start": 855,
"aa_end": null,
"aa_length": 1090,
"cds_start": 2563,
"cds_end": null,
"cds_length": 3273,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_015316.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000202556.14"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2668C>A",
"hgvs_p": "p.Pro890Thr",
"transcript": "ENST00000869341.1",
"protein_id": "ENSP00000539400.1",
"transcript_support_level": null,
"aa_start": 890,
"aa_end": null,
"aa_length": 1125,
"cds_start": 2668,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869341.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2518C>A",
"hgvs_p": "p.Pro840Thr",
"transcript": "ENST00000647748.1",
"protein_id": "ENSP00000497343.1",
"transcript_support_level": null,
"aa_start": 840,
"aa_end": null,
"aa_length": 1075,
"cds_start": 2518,
"cds_end": null,
"cds_length": 3228,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000647748.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2443C>A",
"hgvs_p": "p.Pro815Thr",
"transcript": "ENST00000869342.1",
"protein_id": "ENSP00000539401.1",
"transcript_support_level": null,
"aa_start": 815,
"aa_end": null,
"aa_length": 1050,
"cds_start": 2443,
"cds_end": null,
"cds_length": 3153,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869342.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2872C>A",
"hgvs_p": "p.Pro958Thr",
"transcript": "XM_011536593.4",
"protein_id": "XP_011534895.1",
"transcript_support_level": null,
"aa_start": 958,
"aa_end": null,
"aa_length": 1193,
"cds_start": 2872,
"cds_end": null,
"cds_length": 3582,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011536593.4"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2767C>A",
"hgvs_p": "p.Pro923Thr",
"transcript": "XM_005267487.6",
"protein_id": "XP_005267544.1",
"transcript_support_level": null,
"aa_start": 923,
"aa_end": null,
"aa_length": 1158,
"cds_start": 2767,
"cds_end": null,
"cds_length": 3477,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005267487.6"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2668C>A",
"hgvs_p": "p.Pro890Thr",
"transcript": "XM_017021116.2",
"protein_id": "XP_016876605.1",
"transcript_support_level": null,
"aa_start": 890,
"aa_end": null,
"aa_length": 1125,
"cds_start": 2668,
"cds_end": null,
"cds_length": 3378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017021116.2"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2659C>A",
"hgvs_p": "p.Pro887Thr",
"transcript": "XM_017021117.2",
"protein_id": "XP_016876606.1",
"transcript_support_level": null,
"aa_start": 887,
"aa_end": null,
"aa_length": 1122,
"cds_start": 2659,
"cds_end": null,
"cds_length": 3369,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017021117.2"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2659C>A",
"hgvs_p": "p.Pro887Thr",
"transcript": "XM_047431170.1",
"protein_id": "XP_047287126.1",
"transcript_support_level": null,
"aa_start": 887,
"aa_end": null,
"aa_length": 1122,
"cds_start": 2659,
"cds_end": null,
"cds_length": 3369,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047431170.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2554C>A",
"hgvs_p": "p.Pro852Thr",
"transcript": "XM_047431171.1",
"protein_id": "XP_047287127.1",
"transcript_support_level": null,
"aa_start": 852,
"aa_end": null,
"aa_length": 1087,
"cds_start": 2554,
"cds_end": null,
"cds_length": 3264,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047431171.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.2872C>A",
"hgvs_p": "p.Pro958Thr",
"transcript": "XM_047431172.1",
"protein_id": "XP_047287128.1",
"transcript_support_level": null,
"aa_start": 958,
"aa_end": null,
"aa_length": 1082,
"cds_start": 2872,
"cds_end": null,
"cds_length": 3249,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047431172.1"
},
{
"aa_ref": "P",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.1912C>A",
"hgvs_p": "p.Pro638Thr",
"transcript": "XM_017021119.2",
"protein_id": "XP_016876608.1",
"transcript_support_level": null,
"aa_start": 638,
"aa_end": null,
"aa_length": 873,
"cds_start": 1912,
"cds_end": null,
"cds_length": 2622,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017021119.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "c.1151-3651C>A",
"hgvs_p": null,
"transcript": "ENST00000932297.1",
"protein_id": "ENSP00000602356.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 463,
"cds_start": null,
"cds_end": null,
"cds_length": 1392,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932297.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.1538C>A",
"hgvs_p": null,
"transcript": "ENST00000555391.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000555391.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.245C>A",
"hgvs_p": null,
"transcript": "ENST00000556325.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000556325.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.1528C>A",
"hgvs_p": null,
"transcript": "ENST00000556597.1",
"protein_id": "ENSP00000451739.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000556597.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.*2808C>A",
"hgvs_p": null,
"transcript": "ENST00000557082.5",
"protein_id": "ENSP00000451396.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000557082.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.3202C>A",
"hgvs_p": null,
"transcript": "XR_001750204.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_001750204.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.3202C>A",
"hgvs_p": null,
"transcript": "XR_001750205.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_001750205.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.3202C>A",
"hgvs_p": null,
"transcript": "XR_001750206.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_001750206.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PPP1R13B",
"gene_hgnc_id": 14950,
"hgvs_c": "n.3097C>A",
"hgvs_p": null,
"transcript": "XR_007063997.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
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"biotype": "pseudogene",
"feature": "XR_007063997.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"exon_count": 18,
"intron_rank": null,
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"gene_symbol": "PPP1R13B",
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"hgvs_c": "n.*2808C>A",
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"transcript": "ENST00000557082.5",
"protein_id": "ENSP00000451396.1",
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"cdna_start": null,
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"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000557082.5"
}
],
"gene_symbol": "PPP1R13B",
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"dbsnp": "rs368881952",
"frequency_reference_population": 0.0000012418534,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 6.85721e-7,
"gnomad_genomes_af": 0.00000657125,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.1482284963130951,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.027,
"revel_prediction": "Benign",
"alphamissense_score": 0.0639,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.49,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.518,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_015316.3",
"gene_symbol": "PPP1R13B",
"hgnc_id": 14950,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.2563C>A",
"hgvs_p": "p.Pro855Thr"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}