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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-105769274-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=105769274&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 105769274,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "ENST00000641136.1",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "C",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHG3",
"gene_hgnc_id": 5527,
"hgvs_c": "c.1094T>G",
"hgvs_p": "p.Phe365Cys",
"transcript": "ENST00000641136.1",
"protein_id": "ENSP00000492969.1",
"transcript_support_level": null,
"aa_start": 365,
"aa_end": null,
"aa_length": 445,
"cds_start": 1094,
"cds_end": null,
"cds_length": 1338,
"cdna_start": 1096,
"cdna_end": null,
"cdna_length": 2751,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "C",
"canonical": null,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHG3",
"gene_hgnc_id": 5527,
"hgvs_c": "c.1094T>G",
"hgvs_p": "p.Phe365Cys",
"transcript": "unassigned_transcript_2476",
"protein_id": null,
"transcript_support_level": null,
"aa_start": 365,
"aa_end": null,
"aa_length": 445,
"cds_start": 1094,
"cds_end": null,
"cds_length": 1338,
"cdna_start": 1096,
"cdna_end": null,
"cdna_length": 1340,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHG3",
"gene_hgnc_id": 5527,
"hgvs_c": "c.1094T>G",
"hgvs_p": "p.Phe365Cys",
"transcript": "ENST00000390551.6",
"protein_id": "ENSP00000374993.2",
"transcript_support_level": 6,
"aa_start": 365,
"aa_end": null,
"aa_length": 376,
"cds_start": 1094,
"cds_end": null,
"cds_length": 1131,
"cdna_start": 1096,
"cdna_end": null,
"cdna_length": 1268,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "C",
"canonical": null,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGHG3",
"gene_hgnc_id": 5527,
"hgvs_c": "c.1094T>G",
"hgvs_p": "p.Phe365Cys",
"transcript": "unassigned_transcript_2477",
"protein_id": null,
"transcript_support_level": null,
"aa_start": 365,
"aa_end": null,
"aa_length": 376,
"cds_start": 1094,
"cds_end": null,
"cds_length": 1131,
"cdna_start": 1096,
"cdna_end": null,
"cdna_length": 1133,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": null,
"protein_coding": null,
"strand": true,
"consequences": [
"intragenic_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": null,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IGH",
"gene_hgnc_id": 5477,
"hgvs_c": "n.105769274A>C",
"hgvs_p": null,
"transcript": null,
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "IGHG3",
"gene_hgnc_id": 5527,
"dbsnp": "rs1051112",
"frequency_reference_population": 0.0000031922366,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000319224,
"gnomad_genomes_af": 0.00000713409,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.7300000190734863,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.73,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.035,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Strong",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000641136.1",
"gene_symbol": "IGHG3",
"hgnc_id": 5527,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1094T>G",
"hgvs_p": "p.Phe365Cys"
},
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "",
"gene_symbol": "IGH",
"hgnc_id": 5477,
"effects": [
"intragenic_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.105769274A>C",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}