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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-20693814-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=20693814&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 16,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "ANG",
          "hgnc_id": 483,
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": -16,
          "transcript": "NM_001145.4",
          "verdict": "Benign"
        },
        {
          "benign_score": 16,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS2"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "RNASE4",
          "hgnc_id": 10047,
          "hgvs_c": "c.-17-5541A>G",
          "hgvs_p": null,
          "inheritance_mode": "AR",
          "pathogenic_score": 0,
          "score": -16,
          "transcript": "NM_002937.5",
          "verdict": "Benign"
        },
        {
          "benign_score": 16,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS2"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "ENSG00000259171",
          "hgnc_id": null,
          "hgvs_c": "c.86+164A>G",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": -16,
          "transcript": "ENST00000553909.1",
          "verdict": "Benign"
        },
        {
          "benign_score": 16,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS2"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "EGILA",
          "hgnc_id": 54482,
          "hgvs_c": "n.467-65T>C",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": -16,
          "transcript": "NR_174964.1",
          "verdict": "Benign"
        },
        {
          "benign_score": 16,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BS2"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "ENSG00000303727",
          "hgnc_id": null,
          "hgvs_c": "n.153-7020T>C",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 0,
          "score": -16,
          "transcript": "ENST00000796740.1",
          "verdict": "Benign"
        }
      ],
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BS2",
      "acmg_score": -16,
      "allele_count_reference_population": 1393,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.0632,
      "alt": "G",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.68,
      "chr": "14",
      "clinvar_classification": "Benign",
      "clinvar_disease": "ANG-related disorder,Amyotrophic lateral sclerosis type 9,not provided,not specified",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "B:6",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.004137277603149414,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 748,
          "cdna_start": 379,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001097577.3",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000397990.5",
          "protein_coding": true,
          "protein_id": "NP_001091046.1",
          "strand": true,
          "transcript": "NM_001097577.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 748,
          "cdna_start": 379,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000397990.5",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001097577.3",
          "protein_coding": true,
          "protein_id": "ENSP00000381077.4",
          "strand": true,
          "transcript": "ENST00000397990.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1222,
          "cdna_start": 850,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000336811.10",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000336762.6",
          "strand": true,
          "transcript": "ENST00000336811.10",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2061,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_002937.5",
          "gene_hgnc_id": 10047,
          "gene_symbol": "RNASE4",
          "hgvs_c": "c.-17-5541A>G",
          "hgvs_p": null,
          "intron_rank": 1,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000555835.3",
          "protein_coding": true,
          "protein_id": "NP_002928.1",
          "strand": true,
          "transcript": "NM_002937.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2061,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 2,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000555835.3",
          "gene_hgnc_id": 10047,
          "gene_symbol": "RNASE4",
          "hgvs_c": "c.-17-5541A>G",
          "hgvs_p": null,
          "intron_rank": 1,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002937.5",
          "protein_coding": true,
          "protein_id": "ENSP00000452245.1",
          "strand": true,
          "transcript": "ENST00000555835.3",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 31,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1498,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 96,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 3,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000553909.1",
          "gene_hgnc_id": null,
          "gene_symbol": "ENSG00000259171",
          "hgvs_c": "c.86+164A>G",
          "hgvs_p": null,
          "intron_rank": 2,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000477037.1",
          "strand": true,
          "transcript": "ENST00000553909.1",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1222,
          "cdna_start": 850,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001145.4",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001136.1",
          "strand": true,
          "transcript": "NM_001145.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 960,
          "cdna_start": 591,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001385271.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001372200.1",
          "strand": true,
          "transcript": "NM_001385271.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 869,
          "cdna_start": 500,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001385272.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001372201.1",
          "strand": true,
          "transcript": "NM_001385272.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 774,
          "cdna_start": 405,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001385273.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001372202.1",
          "strand": true,
          "transcript": "NM_001385273.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 729,
          "cdna_start": 360,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001385274.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001372203.1",
          "strand": true,
          "transcript": "NM_001385274.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 726,
          "cdna_start": 362,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000885598.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555657.1",
          "strand": true,
          "transcript": "ENST00000885598.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 698,
          "cdna_start": 331,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000885600.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555659.1",
          "strand": true,
          "transcript": "ENST00000885600.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 814,
          "cdna_start": 447,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000885601.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555660.1",
          "strand": true,
          "transcript": "ENST00000885601.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1715,
          "cdna_start": 460,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000885603.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555662.1",
          "strand": true,
          "transcript": "ENST00000885603.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1808,
          "cdna_start": 556,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000885605.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555664.1",
          "strand": true,
          "transcript": "ENST00000885605.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "E",
          "aa_end": null,
          "aa_length": 147,
          "aa_ref": "K",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1800,
          "cdna_start": 575,
          "cds_end": null,
          "cds_length": 444,
          "cds_start": 250,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000885606.1",
          "gene_hgnc_id": 483,
          "gene_symbol": "ANG",
          "hgvs_c": "c.250A>G",
          "hgvs_p": "p.Lys84Glu",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000555665.1",
          "strand": true,
          "transcript": "ENST00000885606.1",
          "transcript_support_level": null
        },
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.