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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-50395759-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=50395759&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "CDKL1",
"hgnc_id": 1781,
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": 2,
"transcript": "NM_004196.7",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_score": 2,
"allele_count_reference_population": 13,
"alphamissense_prediction": null,
"alphamissense_score": 0.5649,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Pathogenic",
"bayesdelnoaf_score": 0.26,
"chr": "14",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.7295005321502686,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5402,
"cdna_start": 629,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_004196.7",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000395834.6",
"protein_coding": true,
"protein_id": "NP_004187.3",
"strand": false,
"transcript": "NM_004196.7",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5402,
"cdna_start": 629,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000395834.6",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_004196.7",
"protein_coding": true,
"protein_id": "ENSP00000379176.2",
"strand": false,
"transcript": "ENST00000395834.6",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 276,
"aa_ref": "E",
"aa_start": 38,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2209,
"cdna_start": 758,
"cds_end": null,
"cds_length": 831,
"cds_start": 113,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000216378.2",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.113A>T",
"hgvs_p": "p.Glu38Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000216378.2",
"strand": false,
"transcript": "ENST00000216378.2",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 2982,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 20,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000356146.5",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "n.680A>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000356146.5",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5896,
"cdna_start": 1123,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_001423761.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001410690.1",
"strand": false,
"transcript": "NM_001423761.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5483,
"cdna_start": 710,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001423762.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001410691.1",
"strand": false,
"transcript": "NM_001423762.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5425,
"cdna_start": 652,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001423763.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001410692.1",
"strand": false,
"transcript": "NM_001423763.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1748,
"cdna_start": 301,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000906201.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000576260.1",
"strand": false,
"transcript": "ENST00000906201.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1966,
"cdna_start": 650,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000906202.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000576261.1",
"strand": false,
"transcript": "ENST00000906202.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1728,
"cdna_start": 662,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000941216.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000611275.1",
"strand": false,
"transcript": "ENST00000941216.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1757,
"cdna_start": 598,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000941217.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000611276.1",
"strand": false,
"transcript": "ENST00000941217.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 357,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1686,
"cdna_start": 336,
"cds_end": null,
"cds_length": 1074,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000941218.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000611277.1",
"strand": false,
"transcript": "ENST00000941218.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 338,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5345,
"cdna_start": 629,
"cds_end": null,
"cds_length": 1017,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001423764.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001410693.1",
"strand": false,
"transcript": "NM_001423764.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 300,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5254,
"cdna_start": 652,
"cds_end": null,
"cds_length": 903,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001367064.3",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001353993.2",
"strand": false,
"transcript": "NM_001367064.3",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 300,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5312,
"cdna_start": 710,
"cds_end": null,
"cds_length": 903,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001367065.3",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001353994.2",
"strand": false,
"transcript": "NM_001367065.3",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 300,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5231,
"cdna_start": 629,
"cds_end": null,
"cds_length": 903,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001423767.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001410696.1",
"strand": false,
"transcript": "NM_001423767.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 275,
"aa_ref": "E",
"aa_start": 37,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3291,
"cdna_start": 652,
"cds_end": null,
"cds_length": 828,
"cds_start": 110,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001282236.3",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.110A>T",
"hgvs_p": "p.Glu37Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001269165.2",
"strand": false,
"transcript": "NM_001282236.3",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 301,
"aa_ref": "E",
"aa_start": 38,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5268,
"cdna_start": 666,
"cds_end": null,
"cds_length": 906,
"cds_start": 113,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "XM_047431841.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.113A>T",
"hgvs_p": "p.Glu38Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047287797.1",
"strand": false,
"transcript": "XM_047431841.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 279,
"aa_ref": "E",
"aa_start": 38,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7530,
"cdna_start": 666,
"cds_end": null,
"cds_length": 840,
"cds_start": 113,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "XM_017021732.2",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "c.113A>T",
"hgvs_p": "p.Glu38Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_016877221.1",
"strand": false,
"transcript": "XM_017021732.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 704,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 3,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000531052.1",
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"hgvs_c": "n.318A>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000531052.1",
"transcript_support_level": 3
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs373202347",
"effect": "missense_variant",
"frequency_reference_population": 0.0000080548125,
"gene_hgnc_id": 1781,
"gene_symbol": "CDKL1",
"gnomad_exomes_ac": 12,
"gnomad_exomes_af": 0.00000820963,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_ac": 1,
"gnomad_genomes_af": 0.0000065684,
"gnomad_genomes_homalt": 0,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Uncertain significance",
"phenotype_combined": "not specified",
"phylop100way_prediction": "Pathogenic",
"phylop100way_score": 7.924,
"pos": 50395759,
"ref": "T",
"revel_prediction": "Uncertain_significance",
"revel_score": 0.559,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0,
"transcript": "NM_004196.7"
}
]
}