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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-52864456-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=52864456&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 52864456,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "ENST00000341590.8",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "NM_006832.3",
"protein_id": "NP_006823.1",
"transcript_support_level": null,
"aa_start": 516,
"aa_end": null,
"aa_length": 680,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2043,
"cdna_start": 1686,
"cdna_end": null,
"cdna_length": 3286,
"mane_select": "ENST00000341590.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "ENST00000341590.8",
"protein_id": "ENSP00000340391.3",
"transcript_support_level": 1,
"aa_start": 516,
"aa_end": null,
"aa_length": 680,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2043,
"cdna_start": 1686,
"cdna_end": null,
"cdna_length": 3286,
"mane_select": "NM_006832.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "ENST00000553373.5",
"protein_id": "ENSP00000451084.1",
"transcript_support_level": 1,
"aa_start": 516,
"aa_end": null,
"aa_length": 687,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2064,
"cdna_start": 1547,
"cdna_end": null,
"cdna_length": 2064,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "ENST00000395631.6",
"protein_id": "ENSP00000378993.2",
"transcript_support_level": 1,
"aa_start": 516,
"aa_end": null,
"aa_length": 680,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2043,
"cdna_start": 1764,
"cdna_end": null,
"cdna_length": 3369,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "ENST00000399304.7",
"protein_id": "ENSP00000382243.3",
"transcript_support_level": 1,
"aa_start": 516,
"aa_end": null,
"aa_length": 633,
"cds_start": 1547,
"cds_end": null,
"cds_length": 1902,
"cdna_start": 1654,
"cdna_end": null,
"cdna_length": 2082,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "NM_001134999.2",
"protein_id": "NP_001128471.1",
"transcript_support_level": null,
"aa_start": 516,
"aa_end": null,
"aa_length": 687,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2064,
"cdna_start": 1686,
"cdna_end": null,
"cdna_length": 3307,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "ENST00000343279.8",
"protein_id": "ENSP00000342858.4",
"transcript_support_level": 5,
"aa_start": 516,
"aa_end": null,
"aa_length": 687,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2064,
"cdna_start": 1628,
"cdna_end": null,
"cdna_length": 3247,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1406T>G",
"hgvs_p": "p.Ile469Arg",
"transcript": "ENST00000554152.5",
"protein_id": "ENSP00000450741.1",
"transcript_support_level": 5,
"aa_start": 469,
"aa_end": null,
"aa_length": 640,
"cds_start": 1406,
"cds_end": null,
"cds_length": 1923,
"cdna_start": 1406,
"cdna_end": null,
"cdna_length": 3029,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "NM_001135000.2",
"protein_id": "NP_001128472.1",
"transcript_support_level": null,
"aa_start": 516,
"aa_end": null,
"aa_length": 633,
"cds_start": 1547,
"cds_end": null,
"cds_length": 1902,
"cdna_start": 1686,
"cdna_end": null,
"cdna_length": 2296,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1094T>G",
"hgvs_p": "p.Ile365Arg",
"transcript": "ENST00000635305.1",
"protein_id": "ENSP00000489609.1",
"transcript_support_level": 5,
"aa_start": 365,
"aa_end": null,
"aa_length": 544,
"cds_start": 1094,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1095,
"cdna_end": null,
"cdna_length": 2482,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.65T>G",
"hgvs_p": "p.Ile22Arg",
"transcript": "ENST00000553663.5",
"protein_id": "ENSP00000451134.1",
"transcript_support_level": 3,
"aa_start": 22,
"aa_end": null,
"aa_length": 132,
"cds_start": 65,
"cds_end": null,
"cds_length": 399,
"cdna_start": 66,
"cdna_end": null,
"cdna_length": 655,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1580T>G",
"hgvs_p": "p.Ile527Arg",
"transcript": "XM_006720008.4",
"protein_id": "XP_006720071.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 706,
"cds_start": 1580,
"cds_end": null,
"cds_length": 2121,
"cdna_start": 1719,
"cdna_end": null,
"cdna_length": 3364,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1580T>G",
"hgvs_p": "p.Ile527Arg",
"transcript": "XM_006720009.4",
"protein_id": "XP_006720072.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 698,
"cds_start": 1580,
"cds_end": null,
"cds_length": 2097,
"cdna_start": 1719,
"cdna_end": null,
"cdna_length": 3340,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1547T>G",
"hgvs_p": "p.Ile516Arg",
"transcript": "XM_006720010.4",
"protein_id": "XP_006720073.1",
"transcript_support_level": null,
"aa_start": 516,
"aa_end": null,
"aa_length": 695,
"cds_start": 1547,
"cds_end": null,
"cds_length": 2088,
"cdna_start": 1686,
"cdna_end": null,
"cdna_length": 3331,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.1580T>G",
"hgvs_p": "p.Ile527Arg",
"transcript": "XM_005267285.4",
"protein_id": "XP_005267342.1",
"transcript_support_level": null,
"aa_start": 527,
"aa_end": null,
"aa_length": 691,
"cds_start": 1580,
"cds_end": null,
"cds_length": 2076,
"cdna_start": 1719,
"cdna_end": null,
"cdna_length": 3319,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "n.448T>G",
"hgvs_p": null,
"transcript": "ENST00000553768.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 791,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.595A>C",
"hgvs_p": null,
"transcript": "ENST00000740963.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1046,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.573A>C",
"hgvs_p": null,
"transcript": "ENST00000740964.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 822,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.668+31968A>C",
"hgvs_p": null,
"transcript": "ENST00000649005.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 2500,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.410-33617A>C",
"hgvs_p": null,
"transcript": "ENST00000653549.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 1954,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.572-33617A>C",
"hgvs_p": null,
"transcript": "ENST00000654071.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": 2569,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.550-33617A>C",
"hgvs_p": null,
"transcript": "ENST00000658290.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2105,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285664",
"gene_hgnc_id": null,
"hgvs_c": "n.550-33617A>C",
"hgvs_p": null,
"transcript": "ENST00000670923.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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],
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"acmg_score": 3,
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{
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"PP3"
],
"verdict": "Uncertain_significance",
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"effects": [
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{
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"PP3"
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"verdict": "Uncertain_significance",
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"effects": [
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{
"score": 3,
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"verdict": "Uncertain_significance",
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],
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],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}