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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-52922981-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=52922981&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 52922981,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_001134999.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "NM_006832.3",
"protein_id": "NP_006823.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 680,
"cds_start": null,
"cds_end": null,
"cds_length": 2043,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3286,
"mane_select": "ENST00000341590.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006832.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000341590.8",
"protein_id": "ENSP00000340391.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 680,
"cds_start": null,
"cds_end": null,
"cds_length": 2043,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3286,
"mane_select": "NM_006832.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000341590.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000553373.5",
"protein_id": "ENSP00000451084.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 687,
"cds_start": null,
"cds_end": null,
"cds_length": 2064,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2064,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000553373.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000395631.6",
"protein_id": "ENSP00000378993.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 680,
"cds_start": null,
"cds_end": null,
"cds_length": 2043,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3369,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000395631.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000399304.7",
"protein_id": "ENSP00000382243.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": null,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2082,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000399304.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000875235.1",
"protein_id": "ENSP00000545294.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 722,
"cds_start": null,
"cds_end": null,
"cds_length": 2169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3412,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875235.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000970382.1",
"protein_id": "ENSP00000640441.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 707,
"cds_start": null,
"cds_end": null,
"cds_length": 2124,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3379,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970382.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000921870.1",
"protein_id": "ENSP00000591929.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 695,
"cds_start": null,
"cds_end": null,
"cds_length": 2088,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3368,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000921870.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000970380.1",
"protein_id": "ENSP00000640439.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 695,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 3365,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970380.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000875230.1",
"protein_id": "ENSP00000545289.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 691,
"cds_start": null,
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"cds_length": 2076,
"cdna_start": null,
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"cdna_length": 3488,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000875230.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 1,
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"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000970383.1",
"protein_id": "ENSP00000640442.1",
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"cds_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "FERMT2",
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"hgvs_c": "c.158-3625A>G",
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"transcript": "ENST00000875233.1",
"protein_id": "ENSP00000545292.1",
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 2,
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"gene_symbol": "FERMT2",
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"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "NM_001134999.2",
"protein_id": "NP_001128471.1",
"transcript_support_level": null,
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"mane_select": null,
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"feature": "NM_001134999.2"
},
{
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],
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"gene_symbol": "FERMT2",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 2,
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"gene_symbol": "FERMT2",
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"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000875232.1",
"protein_id": "ENSP00000545291.1",
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},
{
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],
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"gene_symbol": "FERMT2",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "FERMT2",
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"hgvs_c": "c.158-3625A>G",
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"transcript": "ENST00000875231.1",
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},
{
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],
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"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000921869.1",
"protein_id": "ENSP00000591928.1",
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},
{
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],
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"gene_symbol": "FERMT2",
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},
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],
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"gene_symbol": "FERMT2",
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},
{
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],
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"gene_symbol": "FERMT2",
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"transcript": "ENST00000970379.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000970379.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "FERMT2",
"gene_hgnc_id": 15767,
"hgvs_c": "c.158-3625A>G",
"hgvs_p": null,
"transcript": "ENST00000875234.1",
"protein_id": "ENSP00000545293.1",
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"aa_start": null,
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"cds_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000875234.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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