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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-68879987-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=68879987&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "14",
      "pos": 68879987,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000394419.9",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "NM_001130004.2",
          "protein_id": "NP_001123476.1",
          "transcript_support_level": null,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": 2501,
          "cdna_end": null,
          "cdna_length": 3722,
          "mane_select": "ENST00000394419.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "ENST00000394419.9",
          "protein_id": "ENSP00000377941.4",
          "transcript_support_level": 1,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": 2501,
          "cdna_end": null,
          "cdna_length": 3722,
          "mane_select": "NM_001130004.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "ENST00000538545.6",
          "protein_id": "ENSP00000439828.2",
          "transcript_support_level": 1,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": 2275,
          "cdna_end": null,
          "cdna_length": 2813,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "ENST00000193403.11",
          "protein_id": "ENSP00000193403.6",
          "transcript_support_level": 1,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 892,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2679,
          "cdna_start": 2639,
          "cdna_end": null,
          "cdna_length": 3799,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "ENST00000438964.6",
          "protein_id": "ENSP00000414272.2",
          "transcript_support_level": 1,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 887,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2664,
          "cdna_start": 2461,
          "cdna_end": null,
          "cdna_length": 3043,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "n.3709G>C",
          "hgvs_p": null,
          "transcript": "ENST00000556083.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4674,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "n.435G>C",
          "hgvs_p": null,
          "transcript": "ENST00000556432.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 558,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "NM_001424012.1",
          "protein_id": "NP_001410941.1",
          "transcript_support_level": null,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 935,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2808,
          "cdna_start": 2501,
          "cdna_end": null,
          "cdna_length": 3785,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2381G>C",
          "hgvs_p": "p.Arg794Pro",
          "transcript": "NM_001424013.1",
          "protein_id": "NP_001410942.1",
          "transcript_support_level": null,
          "aa_start": 794,
          "aa_end": null,
          "aa_length": 934,
          "cds_start": 2381,
          "cds_end": null,
          "cds_length": 2805,
          "cdna_start": 2627,
          "cdna_end": null,
          "cdna_length": 3782,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "NM_001424014.1",
          "protein_id": "NP_001410943.1",
          "transcript_support_level": null,
          "aa_start": 752,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": 2501,
          "cdna_end": null,
          "cdna_length": 3770,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2279G>C",
          "hgvs_p": "p.Arg760Pro",
          "transcript": "ENST00000683198.1",
          "protein_id": "ENSP00000507889.1",
          "transcript_support_level": null,
          "aa_start": 760,
          "aa_end": null,
          "aa_length": 922,
          "cds_start": 2279,
          "cds_end": null,
          "cds_length": 2769,
          "cdna_start": 2567,
          "cdna_end": null,
          "cdna_length": 3784,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2342G>C",
          "hgvs_p": "p.Arg781Pro",
          "transcript": "NM_001424015.1",
          "protein_id": "NP_001410944.1",
          "transcript_support_level": null,
          "aa_start": 781,
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          "cds_start": 2342,
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          "cdna_start": 3130,
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          "cdna_length": 4285,
          "mane_select": null,
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        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "ENST00000682291.1",
          "protein_id": "ENSP00000507093.1",
          "transcript_support_level": null,
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          "cds_start": 2255,
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          "cdna_start": 2543,
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          "mane_select": null,
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        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "ENST00000683342.1",
          "protein_id": "ENSP00000508301.1",
          "transcript_support_level": null,
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          "aa_length": 902,
          "cds_start": 2255,
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          "cdna_start": 2543,
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          "cdna_length": 2999,
          "mane_select": null,
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        },
        {
          "aa_ref": "R",
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          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ACTN1",
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          "hgvs_c": "c.2279G>C",
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        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 18,
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          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2279G>C",
          "hgvs_p": "p.Arg760Pro",
          "transcript": "NM_001411035.1",
          "protein_id": "NP_001397964.1",
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          "cds_start": 2279,
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        {
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2279G>C",
          "hgvs_p": "p.Arg760Pro",
          "transcript": "ENST00000679147.1",
          "protein_id": "ENSP00000504355.1",
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          "cdna_start": 2485,
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        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
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          "protein_id": "NP_001093.1",
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2252G>C",
          "hgvs_p": "p.Arg751Pro",
          "transcript": "NM_001424017.1",
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        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
          "hgvs_c": "c.2255G>C",
          "hgvs_p": "p.Arg752Pro",
          "transcript": "NM_001130005.2",
          "protein_id": "NP_001123477.1",
          "transcript_support_level": null,
          "aa_start": 752,
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          "cds_start": 2255,
          "cds_end": null,
          "cds_length": 2664,
          "cdna_start": 2501,
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          "cdna_length": 3641,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "R",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
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          "gene_symbol": "ACTN1",
          "gene_hgnc_id": 163,
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      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "Platelet-type bleeding disorder 15",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  "message": null
}