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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-72552528-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=72552528&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 72552528,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000553525.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-9889A>G",
"hgvs_p": null,
"transcript": "NM_001204424.2",
"protein_id": "NP_001191353.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 490,
"cds_start": -4,
"cds_end": null,
"cds_length": 1473,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6069,
"mane_select": "ENST00000553525.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-9889A>G",
"hgvs_p": null,
"transcript": "ENST00000553525.6",
"protein_id": "ENSP00000451030.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 490,
"cds_start": -4,
"cds_end": null,
"cds_length": 1473,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6069,
"mane_select": "NM_001204424.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-9889A>G",
"hgvs_p": null,
"transcript": "ENST00000556437.5",
"protein_id": "ENSP00000451855.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 490,
"cds_start": -4,
"cds_end": null,
"cds_length": 1473,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1689,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1369-9889A>G",
"hgvs_p": null,
"transcript": "ENST00000553530.5",
"protein_id": "ENSP00000452331.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 472,
"cds_start": -4,
"cds_end": null,
"cds_length": 1419,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5685,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1369-9889A>G",
"hgvs_p": null,
"transcript": "ENST00000555571.5",
"protein_id": "ENSP00000450936.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 472,
"cds_start": -4,
"cds_end": null,
"cds_length": 1419,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1764,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1006-10187A>G",
"hgvs_p": null,
"transcript": "ENST00000554782.1",
"protein_id": "ENSP00000451912.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 346,
"cds_start": -4,
"cds_end": null,
"cds_length": 1041,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1110,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "n.*21-762A>G",
"hgvs_p": null,
"transcript": "ENST00000554474.5",
"protein_id": "ENSP00000450858.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2111,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-762A>G",
"hgvs_p": null,
"transcript": "NM_001370275.1",
"protein_id": "NP_001357204.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 656,
"cds_start": -4,
"cds_end": null,
"cds_length": 1971,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6007,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-762A>G",
"hgvs_p": null,
"transcript": "NM_001370276.1",
"protein_id": "NP_001357205.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 656,
"cds_start": -4,
"cds_end": null,
"cds_length": 1971,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5575,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1784+5161A>G",
"hgvs_p": null,
"transcript": "NM_001370277.1",
"protein_id": "NP_001357206.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 606,
"cds_start": -4,
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"cds_length": 1821,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1574-9889A>G",
"hgvs_p": null,
"transcript": "NM_001370278.1",
"protein_id": "NP_001357207.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "RGS6",
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"hgvs_c": "c.1423-762A>G",
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"transcript": "NM_001370270.1",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"exon_count": 19,
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"gene_symbol": "RGS6",
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"hgvs_c": "c.1423-762A>G",
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"transcript": "NM_001370271.1",
"protein_id": "NP_001357200.1",
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},
{
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"strand": true,
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],
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"gene_symbol": "RGS6",
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"hgvs_c": "c.1423-762A>G",
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"transcript": "NM_001370272.1",
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},
{
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],
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"gene_symbol": "RGS6",
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"transcript": "NM_001370273.1",
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},
{
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],
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"gene_symbol": "RGS6",
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],
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"hgvs_c": "c.1414-762A>G",
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"transcript": "NM_001370279.1",
"protein_id": "NP_001357208.1",
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},
{
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],
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"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1448-9889A>G",
"hgvs_p": null,
"transcript": "NM_001370280.1",
"protein_id": "NP_001357209.1",
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},
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],
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"gene_symbol": "RGS6",
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"transcript": "NM_001370281.1",
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],
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"gene_symbol": "RGS6",
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},
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],
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},
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-9889A>G",
"hgvs_p": null,
"transcript": "NM_001204416.3",
"protein_id": "NP_001191345.1",
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"aa_start": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 18,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "RGS6",
"gene_hgnc_id": 10002,
"hgvs_c": "c.1423-9889A>G",
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"transcript": "NM_001370284.1",
"protein_id": "NP_001357213.1",
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}