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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-73671555-ATTATCTT-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=73671555&ref=ATTATCTT&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 73671555,
"ref": "ATTATCTT",
"alt": "A",
"effect": "frameshift_variant",
"transcript": "NM_031427.4",
"consequences": [
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.224_230delTATCTTT",
"hgvs_p": "p.Leu75fs",
"transcript": "NM_031427.4",
"protein_id": "NP_113615.2",
"transcript_support_level": null,
"aa_start": 75,
"aa_end": null,
"aa_length": 190,
"cds_start": 224,
"cds_end": null,
"cds_length": 573,
"cdna_start": 278,
"cdna_end": null,
"cdna_length": 8417,
"mane_select": "ENST00000553645.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_031427.4"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.224_230delTATCTTT",
"hgvs_p": "p.Leu75fs",
"transcript": "ENST00000553645.7",
"protein_id": "ENSP00000452037.1",
"transcript_support_level": 1,
"aa_start": 75,
"aa_end": null,
"aa_length": 190,
"cds_start": 224,
"cds_end": null,
"cds_length": 573,
"cdna_start": 278,
"cdna_end": null,
"cdna_length": 8417,
"mane_select": "NM_031427.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000553645.7"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.107_113delTATCTTT",
"hgvs_p": "p.Leu36fs",
"transcript": "ENST00000554871.5",
"protein_id": "ENSP00000451834.1",
"transcript_support_level": 1,
"aa_start": 36,
"aa_end": null,
"aa_length": 151,
"cds_start": 107,
"cds_end": null,
"cds_length": 456,
"cdna_start": 283,
"cdna_end": null,
"cdna_length": 632,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000554871.5"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.107_113delTATCTTT",
"hgvs_p": "p.Leu36fs",
"transcript": "NM_001201366.2",
"protein_id": "NP_001188295.1",
"transcript_support_level": null,
"aa_start": 36,
"aa_end": null,
"aa_length": 151,
"cds_start": 107,
"cds_end": null,
"cds_length": 456,
"cdna_start": 324,
"cdna_end": null,
"cdna_length": 8463,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001201366.2"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.224_230delTATCTTT",
"hgvs_p": "p.Leu75fs",
"transcript": "ENST00000893991.1",
"protein_id": "ENSP00000564050.1",
"transcript_support_level": null,
"aa_start": 75,
"aa_end": null,
"aa_length": 143,
"cds_start": 224,
"cds_end": null,
"cds_length": 432,
"cdna_start": 273,
"cdna_end": null,
"cdna_length": 2304,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000893991.1"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.107_113delTATCTTT",
"hgvs_p": "p.Leu36fs",
"transcript": "ENST00000555631.6",
"protein_id": "ENSP00000451547.2",
"transcript_support_level": 4,
"aa_start": 36,
"aa_end": null,
"aa_length": 137,
"cds_start": 107,
"cds_end": null,
"cds_length": 415,
"cdna_start": 319,
"cdna_end": null,
"cdna_length": 627,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000555631.6"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.107_113delTATCTTT",
"hgvs_p": "p.Leu36fs",
"transcript": "ENST00000555919.7",
"protein_id": "ENSP00000451101.2",
"transcript_support_level": 5,
"aa_start": 36,
"aa_end": null,
"aa_length": 51,
"cds_start": 107,
"cds_end": null,
"cds_length": 157,
"cdna_start": 454,
"cdna_end": null,
"cdna_length": 504,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000555919.7"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.107_113delTATCTTT",
"hgvs_p": "p.Leu36fs",
"transcript": "XM_017021679.3",
"protein_id": "XP_016877168.1",
"transcript_support_level": null,
"aa_start": 36,
"aa_end": null,
"aa_length": 151,
"cds_start": 107,
"cds_end": null,
"cds_length": 456,
"cdna_start": 423,
"cdna_end": null,
"cdna_length": 8562,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017021679.3"
},
{
"aa_ref": "LSL",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.107_113delTATCTTT",
"hgvs_p": "p.Leu36fs",
"transcript": "XM_024449715.2",
"protein_id": "XP_024305483.1",
"transcript_support_level": null,
"aa_start": 36,
"aa_end": null,
"aa_length": 151,
"cds_start": 107,
"cds_end": null,
"cds_length": 456,
"cdna_start": 381,
"cdna_end": null,
"cdna_length": 8520,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024449715.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.-116_-110delTATCTTT",
"hgvs_p": null,
"transcript": "ENST00000311089.7",
"protein_id": "ENSP00000310360.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 77,
"cds_start": null,
"cds_end": null,
"cds_length": 234,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2312,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000311089.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.-263_-257delTATCTTT",
"hgvs_p": null,
"transcript": "ENST00000559993.1",
"protein_id": "ENSP00000453439.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 64,
"cds_start": null,
"cds_end": null,
"cds_length": 195,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 639,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000559993.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.-116_-110delTATCTTT",
"hgvs_p": null,
"transcript": "ENST00000554113.5",
"protein_id": "ENSP00000452368.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 56,
"cds_start": null,
"cds_end": null,
"cds_length": 171,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 526,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000554113.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.4-15702_4-15696delTATCTTT",
"hgvs_p": null,
"transcript": "ENST00000554339.5",
"protein_id": "ENSP00000450744.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 103,
"cds_start": null,
"cds_end": null,
"cds_length": 312,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 548,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000554339.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "c.4-15702_4-15696delTATCTTT",
"hgvs_p": null,
"transcript": "ENST00000914563.1",
"protein_id": "ENSP00000584622.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 56,
"cds_start": null,
"cds_end": null,
"cds_length": 171,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 358,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914563.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"hgvs_c": "n.151+9515_151+9521delTATCTTT",
"hgvs_p": null,
"transcript": "ENST00000554159.1",
"protein_id": "ENSP00000451264.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 452,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000554159.1"
}
],
"gene_symbol": "DNAL1",
"gene_hgnc_id": 23247,
"dbsnp": "rs876657637",
"frequency_reference_population": 0.0000020097136,
"hom_count_reference_population": 0,
"allele_count_reference_population": 3,
"gnomad_exomes_af": 7.4596e-7,
"gnomad_genomes_af": 0.0000131409,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 2,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": null,
"splice_prediction_selected": null,
"splice_source_selected": null,
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 5.167,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": null,
"spliceai_max_prediction": null,
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 18,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 18,
"benign_score": 0,
"pathogenic_score": 18,
"criteria": [
"PVS1",
"PM2",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "NM_031427.4",
"gene_symbol": "DNAL1",
"hgnc_id": 23247,
"effects": [
"frameshift_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.224_230delTATCTTT",
"hgvs_p": "p.Leu75fs"
}
],
"clinvar_disease": "Primary ciliary dyskinesia,Primary ciliary dyskinesia 16",
"clinvar_classification": "Pathogenic/Likely pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:1 LP:1",
"phenotype_combined": "Primary ciliary dyskinesia|Primary ciliary dyskinesia 16",
"pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}