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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-74065249-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=74065249&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 74065249,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_005589.4",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1336G>A",
"hgvs_p": "p.Gly446Arg",
"transcript": "NM_005589.4",
"protein_id": "NP_005580.1",
"transcript_support_level": null,
"aa_start": 446,
"aa_end": null,
"aa_length": 535,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1608,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000553458.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005589.4"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1336G>A",
"hgvs_p": "p.Gly446Arg",
"transcript": "ENST00000553458.6",
"protein_id": "ENSP00000450436.1",
"transcript_support_level": 1,
"aa_start": 446,
"aa_end": null,
"aa_length": 535,
"cds_start": 1336,
"cds_end": null,
"cds_length": 1608,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_005589.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000553458.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*550C>T",
"hgvs_p": null,
"transcript": "NM_025057.3",
"protein_id": "NP_079333.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 529,
"cds_start": null,
"cds_end": null,
"cds_length": 1590,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000394009.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_025057.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*550C>T",
"hgvs_p": null,
"transcript": "ENST00000394009.5",
"protein_id": "ENSP00000377577.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 529,
"cds_start": null,
"cds_end": null,
"cds_length": 1590,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_025057.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000394009.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "n.1554G>A",
"hgvs_p": null,
"transcript": "ENST00000554501.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000554501.5"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1333G>A",
"hgvs_p": "p.Gly445Arg",
"transcript": "ENST00000931795.1",
"protein_id": "ENSP00000601854.1",
"transcript_support_level": null,
"aa_start": 445,
"aa_end": null,
"aa_length": 534,
"cds_start": 1333,
"cds_end": null,
"cds_length": 1605,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931795.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1321G>A",
"hgvs_p": "p.Gly441Arg",
"transcript": "ENST00000901413.1",
"protein_id": "ENSP00000571472.1",
"transcript_support_level": null,
"aa_start": 441,
"aa_end": null,
"aa_length": 530,
"cds_start": 1321,
"cds_end": null,
"cds_length": 1593,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901413.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1297G>A",
"hgvs_p": "p.Gly433Arg",
"transcript": "NM_001278593.2",
"protein_id": "NP_001265522.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 522,
"cds_start": 1297,
"cds_end": null,
"cds_length": 1569,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278593.2"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1297G>A",
"hgvs_p": "p.Gly433Arg",
"transcript": "ENST00000350259.8",
"protein_id": "ENSP00000342564.4",
"transcript_support_level": 2,
"aa_start": 433,
"aa_end": null,
"aa_length": 522,
"cds_start": 1297,
"cds_end": null,
"cds_length": 1569,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000350259.8"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1288G>A",
"hgvs_p": "p.Gly430Arg",
"transcript": "ENST00000901410.1",
"protein_id": "ENSP00000571469.1",
"transcript_support_level": null,
"aa_start": 430,
"aa_end": null,
"aa_length": 519,
"cds_start": 1288,
"cds_end": null,
"cds_length": 1560,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901410.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.1024G>A",
"hgvs_p": "p.Gly342Arg",
"transcript": "ENST00000901411.1",
"protein_id": "ENSP00000571470.1",
"transcript_support_level": null,
"aa_start": 342,
"aa_end": null,
"aa_length": 431,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1296,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901411.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.874G>A",
"hgvs_p": "p.Gly292Arg",
"transcript": "NM_001278594.2",
"protein_id": "NP_001265523.1",
"transcript_support_level": null,
"aa_start": 292,
"aa_end": null,
"aa_length": 381,
"cds_start": 874,
"cds_end": null,
"cds_length": 1146,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278594.2"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.832G>A",
"hgvs_p": "p.Gly278Arg",
"transcript": "ENST00000901408.1",
"protein_id": "ENSP00000571467.1",
"transcript_support_level": null,
"aa_start": 278,
"aa_end": null,
"aa_length": 367,
"cds_start": 832,
"cds_end": null,
"cds_length": 1104,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901408.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.595G>A",
"hgvs_p": "p.Gly199Arg",
"transcript": "ENST00000901409.1",
"protein_id": "ENSP00000571468.1",
"transcript_support_level": null,
"aa_start": 199,
"aa_end": null,
"aa_length": 288,
"cds_start": 595,
"cds_end": null,
"cds_length": 867,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901409.1"
},
{
"aa_ref": "G",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ALDH6A1",
"gene_hgnc_id": 7179,
"hgvs_c": "c.487G>A",
"hgvs_p": "p.Gly163Arg",
"transcript": "ENST00000555126.1",
"protein_id": "ENSP00000452081.1",
"transcript_support_level": 2,
"aa_start": 163,
"aa_end": null,
"aa_length": 252,
"cds_start": 487,
"cds_end": null,
"cds_length": 759,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000555126.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*550C>T",
"hgvs_p": null,
"transcript": "ENST00000901146.1",
"protein_id": "ENSP00000571205.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 481,
"cds_start": null,
"cds_end": null,
"cds_length": 1446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901146.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*550C>T",
"hgvs_p": null,
"transcript": "ENST00000901145.1",
"protein_id": "ENSP00000571204.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 316,
"cds_start": null,
"cds_end": null,
"cds_length": 951,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000901145.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*461C>T",
"hgvs_p": null,
"transcript": "XM_011537171.3",
"protein_id": "XP_011535473.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 597,
"cds_start": null,
"cds_end": null,
"cds_length": 1794,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011537171.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*550C>T",
"hgvs_p": null,
"transcript": "XM_011537174.3",
"protein_id": "XP_011535476.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 565,
"cds_start": null,
"cds_end": null,
"cds_length": 1698,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011537174.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*461C>T",
"hgvs_p": null,
"transcript": "XM_047431778.1",
"protein_id": "XP_047287734.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 561,
"cds_start": null,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047431778.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*550C>T",
"hgvs_p": null,
"transcript": "XM_047431779.1",
"protein_id": "XP_047287735.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 481,
"cds_start": null,
"cds_end": null,
"cds_length": 1446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047431779.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BBOF1",
"gene_hgnc_id": 19855,
"hgvs_c": "c.*461C>T",
"hgvs_p": null,
"transcript": "XM_017021660.2",
"protein_id": "XP_016877149.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 421,
"cds_start": null,
"cds_end": null,
"cds_length": 1266,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017021660.2"
},
{
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"splice_prediction_selected": "Benign",
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"acmg_by_gene": [
{
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"verdict": "Likely_pathogenic",
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{
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"PP5"
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"verdict": "Likely_pathogenic",
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],
"clinvar_disease": "Methylmalonate semialdehyde dehydrogenase deficiency",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Methylmalonate semialdehyde dehydrogenase deficiency",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}