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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-74734127-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=74734127&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 74734127,
"ref": "C",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_015962.5",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.505C>G",
"hgvs_p": "p.Arg169Gly",
"transcript": "NM_015962.5",
"protein_id": "NP_057046.1",
"transcript_support_level": null,
"aa_start": 169,
"aa_end": null,
"aa_length": 198,
"cds_start": 505,
"cds_end": null,
"cds_length": 597,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000341162.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015962.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.505C>G",
"hgvs_p": "p.Arg169Gly",
"transcript": "ENST00000341162.8",
"protein_id": "ENSP00000344393.4",
"transcript_support_level": 1,
"aa_start": 169,
"aa_end": null,
"aa_length": 198,
"cds_start": 505,
"cds_end": null,
"cds_length": 597,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_015962.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000341162.8"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.469C>G",
"hgvs_p": "p.Arg157Gly",
"transcript": "NM_001318508.2",
"protein_id": "NP_001305437.1",
"transcript_support_level": null,
"aa_start": 157,
"aa_end": null,
"aa_length": 186,
"cds_start": 469,
"cds_end": null,
"cds_length": 561,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001318508.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.469C>G",
"hgvs_p": "p.Arg157Gly",
"transcript": "ENST00000534938.6",
"protein_id": "ENSP00000444939.2",
"transcript_support_level": 3,
"aa_start": 157,
"aa_end": null,
"aa_length": 186,
"cds_start": 469,
"cds_end": null,
"cds_length": 561,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000534938.6"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.460C>G",
"hgvs_p": "p.Arg154Gly",
"transcript": "ENST00000553615.5",
"protein_id": "ENSP00000452497.1",
"transcript_support_level": 3,
"aa_start": 154,
"aa_end": null,
"aa_length": 183,
"cds_start": 460,
"cds_end": null,
"cds_length": 552,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000553615.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.433C>G",
"hgvs_p": "p.Arg145Gly",
"transcript": "XM_011536815.4",
"protein_id": "XP_011535117.1",
"transcript_support_level": null,
"aa_start": 145,
"aa_end": null,
"aa_length": 174,
"cds_start": 433,
"cds_end": null,
"cds_length": 525,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011536815.4"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "c.397C>G",
"hgvs_p": "p.Arg133Gly",
"transcript": "XM_011536816.4",
"protein_id": "XP_011535118.1",
"transcript_support_level": null,
"aa_start": 133,
"aa_end": null,
"aa_length": 162,
"cds_start": 397,
"cds_end": null,
"cds_length": 489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011536816.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "n.*264C>G",
"hgvs_p": null,
"transcript": "ENST00000556814.5",
"protein_id": "ENSP00000451345.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000556814.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"hgvs_c": "n.*264C>G",
"hgvs_p": null,
"transcript": "ENST00000556814.5",
"protein_id": "ENSP00000451345.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000556814.5"
}
],
"gene_symbol": "FCF1",
"gene_hgnc_id": 20220,
"dbsnp": "rs769520160",
"frequency_reference_population": 6.842585e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.84258e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9767287969589233,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.8299999833106995,
"splice_prediction_selected": "Pathogenic",
"splice_source_selected": "max_spliceai",
"revel_score": 0.738,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9984,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.15,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 1.994,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.83,
"spliceai_max_prediction": "Pathogenic",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 4,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate",
"acmg_by_gene": [
{
"score": 4,
"benign_score": 0,
"pathogenic_score": 4,
"criteria": [
"PM2",
"PP3_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_015962.5",
"gene_symbol": "FCF1",
"hgnc_id": 20220,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.505C>G",
"hgvs_p": "p.Arg169Gly"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}