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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-75469357-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=75469357&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "14",
      "pos": 75469357,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_001135049.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "NM_001135048.2",
          "protein_id": "NP_001128520.1",
          "transcript_support_level": null,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
          "cds_end": null,
          "cds_length": 492,
          "cdna_start": 628,
          "cdna_end": null,
          "cdna_length": 5378,
          "mane_select": "ENST00000651602.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001135048.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000651602.1",
          "protein_id": "ENSP00000498745.1",
          "transcript_support_level": null,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
          "cds_end": null,
          "cds_length": 492,
          "cdna_start": 628,
          "cdna_end": null,
          "cdna_length": 5378,
          "mane_select": "NM_001135048.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000651602.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.407G>A",
          "hgvs_p": "p.Arg136Gln",
          "transcript": "ENST00000267569.5",
          "protein_id": "ENSP00000267569.5",
          "transcript_support_level": 1,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 174,
          "cds_start": 407,
          "cds_end": null,
          "cds_length": 525,
          "cdna_start": 600,
          "cdna_end": null,
          "cdna_length": 1700,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000267569.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000435893.6",
          "protein_id": "ENSP00000399587.2",
          "transcript_support_level": 1,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
          "cds_end": null,
          "cds_length": 492,
          "cdna_start": 647,
          "cdna_end": null,
          "cdna_length": 5401,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000435893.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.467G>A",
          "hgvs_p": "p.Arg156Gln",
          "transcript": "ENST00000955938.1",
          "protein_id": "ENSP00000625997.1",
          "transcript_support_level": null,
          "aa_start": 156,
          "aa_end": null,
          "aa_length": 194,
          "cds_start": 467,
          "cds_end": null,
          "cds_length": 585,
          "cdna_start": 759,
          "cdna_end": null,
          "cdna_length": 1855,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000955938.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.407G>A",
          "hgvs_p": "p.Arg136Gln",
          "transcript": "NM_001135049.1",
          "protein_id": "NP_001128521.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 174,
          "cds_start": 407,
          "cds_end": null,
          "cds_length": 525,
          "cdna_start": 600,
          "cdna_end": null,
          "cdna_length": 3944,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001135049.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "NM_001135047.2",
          "protein_id": "NP_001128519.1",
          "transcript_support_level": null,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
          "cds_end": null,
          "cds_length": 492,
          "cdna_start": 523,
          "cdna_end": null,
          "cdna_length": 5273,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001135047.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "NM_130469.3",
          "protein_id": "NP_569736.1",
          "transcript_support_level": null,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
          "cds_end": null,
          "cds_length": 492,
          "cdna_start": 647,
          "cdna_end": null,
          "cdna_length": 3991,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_130469.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000419727.6",
          "protein_id": "ENSP00000415558.2",
          "transcript_support_level": 2,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
          "cds_end": null,
          "cds_length": 492,
          "cdna_start": 531,
          "cdna_end": null,
          "cdna_length": 972,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000419727.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000437176.5",
          "protein_id": "ENSP00000409787.1",
          "transcript_support_level": 3,
          "aa_start": 125,
          "aa_end": null,
          "aa_length": 163,
          "cds_start": 374,
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          "cdna_start": 433,
          "cdna_end": null,
          "cdna_length": 3775,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
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          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000879974.1",
          "protein_id": "ENSP00000550033.1",
          "transcript_support_level": null,
          "aa_start": 125,
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          "aa_length": 163,
          "cds_start": 374,
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          "cdna_start": 2345,
          "cdna_end": null,
          "cdna_length": 3443,
          "mane_select": null,
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          "biotype": "protein_coding",
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        {
          "aa_ref": "R",
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          "gene_symbol": "JDP2",
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          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000879975.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
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        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000924615.1",
          "protein_id": "ENSP00000594674.1",
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        {
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          ],
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          "gene_symbol": "JDP2",
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          "hgvs_c": "c.374G>A",
          "hgvs_p": "p.Arg125Gln",
          "transcript": "ENST00000924616.1",
          "protein_id": "ENSP00000594675.1",
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          "gene_symbol": "JDP2",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          "intron_rank": null,
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          "gene_symbol": "JDP2",
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          "hgvs_c": "c.374G>A",
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          "transcript": "ENST00000955939.1",
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        {
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          "gene_symbol": "JDP2",
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          "hgvs_c": "c.374G>A",
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          "transcript": "ENST00000955940.1",
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        {
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        {
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          "biotype": "protein_coding",
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        {
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          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "JDP2",
          "gene_hgnc_id": 17546,
          "hgvs_c": "c.503G>A",
          "hgvs_p": "p.Arg168Gln",
          "transcript": "XM_047430942.1",
          "protein_id": "XP_047286898.1",
          "transcript_support_level": null,
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        {
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        {
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        {
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          "transcript": "XM_017020973.2",
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          "biotype": "protein_coding",
          "feature": "XM_017020973.2"
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      ],
      "gene_symbol": "JDP2",
      "gene_hgnc_id": 17546,
      "dbsnp": "rs1173392439",
      "frequency_reference_population": 0.0000041044837,
      "hom_count_reference_population": 0,
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      "gnomad_exomes_af": 0.00000410448,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 6,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.33795642852783203,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.172,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.4779,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.27,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 4.967,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -5,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4,BS2",
      "acmg_by_gene": [
        {
          "score": -5,
          "benign_score": 5,
          "pathogenic_score": 0,
          "criteria": [
            "BP4",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_001135049.1",
          "gene_symbol": "JDP2",
          "hgnc_id": 17546,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.407G>A",
          "hgvs_p": "p.Arg136Gln"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.