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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-78703485-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=78703485&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 78703485,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000335750.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.1222-5732A>G",
"hgvs_p": null,
"transcript": "NM_001330195.2",
"protein_id": "NP_001317124.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1571,
"cds_start": -4,
"cds_end": null,
"cds_length": 4716,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12048,
"mane_select": "ENST00000335750.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.1222-5732A>G",
"hgvs_p": null,
"transcript": "ENST00000335750.7",
"protein_id": "ENSP00000338349.7",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1571,
"cds_start": -4,
"cds_end": null,
"cds_length": 4716,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12048,
"mane_select": "NM_001330195.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.103-5732A>G",
"hgvs_p": null,
"transcript": "ENST00000554719.5",
"protein_id": "ENSP00000451648.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1061,
"cds_start": -4,
"cds_end": null,
"cds_length": 3186,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4156,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "n.566-5732A>G",
"hgvs_p": null,
"transcript": "ENST00000556496.2",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2737,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.1222-5732A>G",
"hgvs_p": null,
"transcript": "NM_001366425.1",
"protein_id": "NP_001353354.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1541,
"cds_start": -4,
"cds_end": null,
"cds_length": 4626,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 11958,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.1234-5732A>G",
"hgvs_p": null,
"transcript": "NM_001366426.1",
"protein_id": "NP_001353355.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1468,
"cds_start": -4,
"cds_end": null,
"cds_length": 4407,
"cdna_start": null,
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"cdna_length": 11739,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.1234-5732A>G",
"hgvs_p": null,
"transcript": "ENST00000634499.2",
"protein_id": "ENSP00000488920.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1468,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 5412,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.1216-5732A>G",
"hgvs_p": null,
"transcript": "ENST00000554738.5",
"protein_id": "ENSP00000450683.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1392,
"cds_start": -4,
"cds_end": null,
"cds_length": 4179,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6446,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.463-5732A>G",
"hgvs_p": null,
"transcript": "ENST00000635466.2",
"protein_id": "ENSP00000489551.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1327,
"cds_start": -4,
"cds_end": null,
"cds_length": 3984,
"cdna_start": null,
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"cdna_length": 3986,
"mane_select": null,
"mane_plus": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.103-5732A>G",
"hgvs_p": null,
"transcript": "NM_004796.6",
"protein_id": "NP_004787.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1061,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 1,
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"gene_symbol": "NRXN3",
"gene_hgnc_id": 8010,
"hgvs_c": "c.-122-5012A>G",
"hgvs_p": null,
"transcript": "ENST00000557081.1",
"protein_id": "ENSP00000450462.1",
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"aa_start": null,
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"cdna_start": null,
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},
{
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],
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"gene_symbol": "NRXN3",
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"transcript": "ENST00000553631.1",
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},
{
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],
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"gene_symbol": "NRXN3",
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},
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"strand": true,
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],
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"gene_symbol": "NRXN3",
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},
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],
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},
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],
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"gene_symbol": "NRXN3",
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],
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"gene_symbol": "NRXN3",
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"hgvs_c": "c.1258-5732A>G",
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"transcript": "XM_005268218.4",
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],
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"gene_symbol": "NRXN3",
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],
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"gene_symbol": "NRXN3",
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"hgvs_c": "c.1222-5732A>G",
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"transcript": "XM_017021794.2",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"exon_count": 21,
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"gene_symbol": "NRXN3",
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"hgvs_c": "c.1222-5732A>G",
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