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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-87941516-A-AG (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=87941516&ref=A&alt=AG&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5_Moderate"
          ],
          "effects": [
            "frameshift_variant"
          ],
          "gene_symbol": "GALC",
          "hgnc_id": 4115,
          "hgvs_c": "c.1712dupC",
          "hgvs_p": "p.Asp572fs",
          "inheritance_mode": "AR",
          "pathogenic_score": 12,
          "score": 12,
          "transcript": "NM_000153.4",
          "verdict": "Pathogenic"
        }
      ],
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5_Moderate",
      "acmg_score": 12,
      "allele_count_reference_population": 1,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AG",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "14",
      "clinvar_classification": "Pathogenic",
      "clinvar_disease": "Galactosylceramide beta-galactosidase deficiency",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "P:1",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 685,
          "aa_ref": "P",
          "aa_start": 571,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3794,
          "cdna_start": 1730,
          "cds_end": null,
          "cds_length": 2058,
          "cds_start": 1712,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_000153.4",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1712dupC",
          "hgvs_p": "p.Asp572fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000261304.7",
          "protein_coding": true,
          "protein_id": "NP_000144.2",
          "strand": false,
          "transcript": "NM_000153.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 685,
          "aa_ref": "P",
          "aa_start": 571,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3794,
          "cdna_start": 1730,
          "cds_end": null,
          "cds_length": 2058,
          "cds_start": 1712,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000261304.7",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1712dupC",
          "hgvs_p": "p.Asp572fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_000153.4",
          "protein_coding": true,
          "protein_id": "ENSP00000261304.2",
          "strand": false,
          "transcript": "ENST00000261304.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 672,
          "aa_ref": "P",
          "aa_start": 558,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3737,
          "cdna_start": 1676,
          "cds_end": null,
          "cds_length": 2019,
          "cds_start": 1673,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 16,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000921945.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1673dupC",
          "hgvs_p": "p.Asp559fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000592004.1",
          "strand": false,
          "transcript": "ENST00000921945.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 663,
          "aa_ref": "P",
          "aa_start": 549,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3736,
          "cdna_start": 1672,
          "cds_end": null,
          "cds_length": 1992,
          "cds_start": 1646,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000950382.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1646dupC",
          "hgvs_p": "p.Asp550fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000620441.1",
          "strand": false,
          "transcript": "ENST00000950382.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 662,
          "aa_ref": "P",
          "aa_start": 548,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3725,
          "cdna_start": 1661,
          "cds_end": null,
          "cds_length": 1989,
          "cds_start": 1643,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 16,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "NM_001201401.2",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1643dupC",
          "hgvs_p": "p.Asp549fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001188330.1",
          "strand": false,
          "transcript": "NM_001201401.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 662,
          "aa_ref": "P",
          "aa_start": 548,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2054,
          "cdna_start": 1657,
          "cds_end": null,
          "cds_length": 1989,
          "cds_start": 1643,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 16,
          "exon_rank": 14,
          "exon_rank_end": null,
          "feature": "ENST00000393568.8",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1643dupC",
          "hgvs_p": "p.Asp549fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000377198.4",
          "strand": false,
          "transcript": "ENST00000393568.8",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 659,
          "aa_ref": "P",
          "aa_start": 545,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3864,
          "cdna_start": 1800,
          "cds_end": null,
          "cds_length": 1980,
          "cds_start": 1634,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_001201402.2",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1634dupC",
          "hgvs_p": "p.Asp546fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001188331.1",
          "strand": false,
          "transcript": "NM_001201402.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 659,
          "aa_ref": "P",
          "aa_start": 545,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2547,
          "cdna_start": 1800,
          "cds_end": null,
          "cds_length": 1980,
          "cds_start": 1634,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000393569.6",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1634dupC",
          "hgvs_p": "p.Asp546fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000377199.2",
          "strand": false,
          "transcript": "ENST00000393569.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 648,
          "aa_ref": "P",
          "aa_start": 571,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3681,
          "cdna_start": 1731,
          "cds_end": null,
          "cds_length": 1947,
          "cds_start": 1712,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000872271.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1712dupC",
          "hgvs_p": "p.Asp572fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000542330.1",
          "strand": false,
          "transcript": "ENST00000872271.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 629,
          "aa_ref": "P",
          "aa_start": 515,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4132,
          "cdna_start": 2068,
          "cds_end": null,
          "cds_length": 1890,
          "cds_start": 1544,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_001424071.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1544dupC",
          "hgvs_p": "p.Asp516fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411000.1",
          "strand": false,
          "transcript": "NM_001424071.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 629,
          "aa_ref": "P",
          "aa_start": 515,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3896,
          "cdna_start": 1832,
          "cds_end": null,
          "cds_length": 1890,
          "cds_start": 1544,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 18,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "NM_001424072.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1544dupC",
          "hgvs_p": "p.Asp516fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411001.1",
          "strand": false,
          "transcript": "NM_001424072.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 589,
          "aa_ref": "P",
          "aa_start": 515,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3253,
          "cdna_start": 2068,
          "cds_end": null,
          "cds_length": 1770,
          "cds_start": 1544,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_001424073.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1544dupC",
          "hgvs_p": "p.Asp516fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411002.1",
          "strand": false,
          "transcript": "NM_001424073.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 589,
          "aa_ref": "P",
          "aa_start": 515,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2528,
          "cdna_start": 2052,
          "cds_end": null,
          "cds_length": 1770,
          "cds_start": 1544,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000544807.6",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1544dupC",
          "hgvs_p": "p.Asp516fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000437513.2",
          "strand": false,
          "transcript": "ENST00000544807.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 569,
          "aa_ref": "P",
          "aa_start": 455,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5339,
          "cdna_start": 3275,
          "cds_end": null,
          "cds_length": 1710,
          "cds_start": 1364,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 17,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "NM_001424074.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1364dupC",
          "hgvs_p": "p.Asp456fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411003.1",
          "strand": false,
          "transcript": "NM_001424074.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 569,
          "aa_ref": "P",
          "aa_start": 455,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3882,
          "cdna_start": 1818,
          "cds_end": null,
          "cds_length": 1710,
          "cds_start": 1364,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 18,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "NM_001424075.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1364dupC",
          "hgvs_p": "p.Asp456fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411004.1",
          "strand": false,
          "transcript": "NM_001424075.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 474,
          "aa_ref": "P",
          "aa_start": 360,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3900,
          "cdna_start": 1836,
          "cds_end": null,
          "cds_length": 1425,
          "cds_start": 1079,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 18,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "NM_001424076.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1079dupC",
          "hgvs_p": "p.Asp361fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411005.1",
          "strand": false,
          "transcript": "NM_001424076.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 474,
          "aa_ref": "P",
          "aa_start": 360,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3828,
          "cdna_start": 1764,
          "cds_end": null,
          "cds_length": 1425,
          "cds_start": 1079,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 18,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "NM_001424077.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1079dupC",
          "hgvs_p": "p.Asp361fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001411006.1",
          "strand": false,
          "transcript": "NM_001424077.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "P?",
          "aa_end": null,
          "aa_length": 569,
          "aa_ref": "P",
          "aa_start": 455,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3552,
          "cdna_start": 1488,
          "cds_end": null,
          "cds_length": 1710,
          "cds_start": 1364,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 15,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "XM_047431199.1",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "c.1364dupC",
          "hgvs_p": "p.Asp456fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047287155.1",
          "strand": false,
          "transcript": "XM_047431199.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2067,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 14,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000555000.5",
          "gene_hgnc_id": 4115,
          "gene_symbol": "GALC",
          "hgvs_c": "n.1079dupC",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000450472.1",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.