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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 14-90644085-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=90644085&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "14",
"pos": 90644085,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001401365.1",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val",
"transcript": "NM_001010854.2",
"protein_id": "NP_001010854.1",
"transcript_support_level": null,
"aa_start": 572,
"aa_end": null,
"aa_length": 843,
"cds_start": 1714,
"cds_end": null,
"cds_length": 2532,
"cdna_start": 1849,
"cdna_end": null,
"cdna_length": 19471,
"mane_select": "ENST00000328459.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001010854.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val",
"transcript": "ENST00000328459.11",
"protein_id": "ENSP00000336127.4",
"transcript_support_level": 1,
"aa_start": 572,
"aa_end": null,
"aa_length": 843,
"cds_start": 1714,
"cds_end": null,
"cds_length": 2532,
"cdna_start": 1849,
"cdna_end": null,
"cdna_length": 19471,
"mane_select": "NM_001010854.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000328459.11"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.124A>G",
"hgvs_p": "p.Ile42Val",
"transcript": "ENST00000553972.5",
"protein_id": "ENSP00000451440.1",
"transcript_support_level": 1,
"aa_start": 42,
"aa_end": null,
"aa_length": 330,
"cds_start": 124,
"cds_end": null,
"cds_length": 993,
"cdna_start": 124,
"cdna_end": null,
"cdna_length": 1719,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000553972.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TTC7B-AS1",
"gene_hgnc_id": 56196,
"hgvs_c": "n.92-659T>C",
"hgvs_p": null,
"transcript": "ENST00000557007.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1237,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000557007.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val",
"transcript": "NM_001401365.1",
"protein_id": "NP_001388294.1",
"transcript_support_level": null,
"aa_start": 572,
"aa_end": null,
"aa_length": 914,
"cds_start": 1714,
"cds_end": null,
"cds_length": 2745,
"cdna_start": 1849,
"cdna_end": null,
"cdna_length": 19684,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001401365.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val",
"transcript": "ENST00000963264.1",
"protein_id": "ENSP00000633323.1",
"transcript_support_level": null,
"aa_start": 572,
"aa_end": null,
"aa_length": 897,
"cds_start": 1714,
"cds_end": null,
"cds_length": 2694,
"cdna_start": 1904,
"cdna_end": null,
"cdna_length": 3663,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000963264.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val",
"transcript": "ENST00000963265.1",
"protein_id": "ENSP00000633324.1",
"transcript_support_level": null,
"aa_start": 572,
"aa_end": null,
"aa_length": 868,
"cds_start": 1714,
"cds_end": null,
"cds_length": 2607,
"cdna_start": 1800,
"cdna_end": null,
"cdna_length": 3472,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000963265.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1738A>G",
"hgvs_p": "p.Ile580Val",
"transcript": "ENST00000963266.1",
"protein_id": "ENSP00000633325.1",
"transcript_support_level": null,
"aa_start": 580,
"aa_end": null,
"aa_length": 851,
"cds_start": 1738,
"cds_end": null,
"cds_length": 2556,
"cdna_start": 1813,
"cdna_end": null,
"cdna_length": 3410,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000963266.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val",
"transcript": "ENST00000919976.1",
"protein_id": "ENSP00000590035.1",
"transcript_support_level": null,
"aa_start": 572,
"aa_end": null,
"aa_length": 796,
"cds_start": 1714,
"cds_end": null,
"cds_length": 2391,
"cdna_start": 1919,
"cdna_end": null,
"cdna_length": 3372,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919976.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1408A>G",
"hgvs_p": "p.Ile470Val",
"transcript": "NM_001320421.2",
"protein_id": "NP_001307350.1",
"transcript_support_level": null,
"aa_start": 470,
"aa_end": null,
"aa_length": 758,
"cds_start": 1408,
"cds_end": null,
"cds_length": 2277,
"cdna_start": 1845,
"cdna_end": null,
"cdna_length": 19518,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001320421.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "c.1390A>G",
"hgvs_p": "p.Ile464Val",
"transcript": "ENST00000919977.1",
"protein_id": "ENSP00000590036.1",
"transcript_support_level": null,
"aa_start": 464,
"aa_end": null,
"aa_length": 735,
"cds_start": 1390,
"cds_end": null,
"cds_length": 2208,
"cdna_start": 1487,
"cdna_end": null,
"cdna_length": 3085,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919977.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "n.252A>G",
"hgvs_p": null,
"transcript": "ENST00000554654.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1847,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000554654.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "n.937A>G",
"hgvs_p": null,
"transcript": "ENST00000555005.5",
"protein_id": "ENSP00000451825.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2730,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000555005.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "n.*74A>G",
"hgvs_p": null,
"transcript": "ENST00000555239.5",
"protein_id": "ENSP00000450520.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 591,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000555239.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "n.648A>G",
"hgvs_p": null,
"transcript": "ENST00000556490.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 685,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000556490.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"hgvs_c": "n.*74A>G",
"hgvs_p": null,
"transcript": "ENST00000555239.5",
"protein_id": "ENSP00000450520.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 591,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000555239.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TTC7B-AS1",
"gene_hgnc_id": 56196,
"hgvs_c": "n.129-659T>C",
"hgvs_p": null,
"transcript": "ENST00000553826.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 520,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000553826.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TTC7B-AS1",
"gene_hgnc_id": 56196,
"hgvs_c": "n.84-659T>C",
"hgvs_p": null,
"transcript": "ENST00000662027.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 802,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000662027.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TTC7B-AS1",
"gene_hgnc_id": 56196,
"hgvs_c": "n.103-659T>C",
"hgvs_p": null,
"transcript": "NR_110134.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1245,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_110134.1"
}
],
"gene_symbol": "TTC7B",
"gene_hgnc_id": 19858,
"dbsnp": "rs1462120287",
"frequency_reference_population": 0.0000024784529,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": 6.84047e-7,
"gnomad_genomes_af": 0.000019734,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 3,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.15535038709640503,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.102,
"revel_prediction": "Benign",
"alphamissense_score": 0.0703,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.32,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 4.847,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001401365.1",
"gene_symbol": "TTC7B",
"hgnc_id": 19858,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1714A>G",
"hgvs_p": "p.Ile572Val"
},
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000557007.1",
"gene_symbol": "TTC7B-AS1",
"hgnc_id": 56196,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.92-659T>C",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}