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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 14-94290457-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=14&pos=94290457&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "14",
      "pos": 94290457,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_016186.3",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "NM_001100607.3",
          "protein_id": "NP_001094077.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000261994.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001100607.3"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000261994.9",
          "protein_id": "ENSP00000261994.4",
          "transcript_support_level": 1,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001100607.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000261994.9"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.257A>G",
          "hgvs_p": "p.Lys86Arg",
          "transcript": "ENST00000554723.5",
          "protein_id": "ENSP00000450896.1",
          "transcript_support_level": 1,
          "aa_start": 86,
          "aa_end": null,
          "aa_length": 484,
          "cds_start": 257,
          "cds_end": null,
          "cds_length": 1455,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000554723.5"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000393096.5",
          "protein_id": "ENSP00000376809.1",
          "transcript_support_level": 1,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393096.5"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000554173.1",
          "protein_id": "ENSP00000450971.1",
          "transcript_support_level": 1,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000554173.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "NM_016186.3",
          "protein_id": "NP_057270.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_016186.3"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903617.1",
          "protein_id": "ENSP00000573676.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903617.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903619.1",
          "protein_id": "ENSP00000573678.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903619.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903620.1",
          "protein_id": "ENSP00000573679.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903620.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903622.1",
          "protein_id": "ENSP00000573681.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903622.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903623.1",
          "protein_id": "ENSP00000573682.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903623.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903624.1",
          "protein_id": "ENSP00000573683.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903624.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903625.1",
          "protein_id": "ENSP00000573684.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903625.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903626.1",
          "protein_id": "ENSP00000573685.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903626.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903627.1",
          "protein_id": "ENSP00000573686.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903627.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903628.1",
          "protein_id": "ENSP00000573687.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903628.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903629.1",
          "protein_id": "ENSP00000573688.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000903629.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000903630.1",
          "protein_id": "ENSP00000573689.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
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          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000903630.1"
        },
        {
          "aa_ref": "K",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000943554.1",
          "protein_id": "ENSP00000613613.1",
          "transcript_support_level": null,
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          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000943554.1"
        },
        {
          "aa_ref": "K",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SERPINA10",
          "gene_hgnc_id": 15996,
          "hgvs_c": "c.137A>G",
          "hgvs_p": "p.Lys46Arg",
          "transcript": "ENST00000943555.1",
          "protein_id": "ENSP00000613614.1",
          "transcript_support_level": null,
          "aa_start": 46,
          "aa_end": null,
          "aa_length": 444,
          "cds_start": 137,
          "cds_end": null,
          "cds_length": 1335,
          "cdna_start": null,
          "cdna_end": null,
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      "acmg_classification": "Benign",
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          "verdict": "Benign",
          "transcript": "NM_016186.3",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}