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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-22858272-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=22858272&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 22858272,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "NM_030922.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "NM_030922.7",
"protein_id": "NP_112184.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3227,
"mane_select": "ENST00000337451.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "ENST00000337451.8",
"protein_id": "ENSP00000337618.3",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3227,
"mane_select": "NM_030922.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "ENST00000398013.7",
"protein_id": "ENSP00000381095.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2280,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.140-268C>T",
"hgvs_p": null,
"transcript": "ENST00000359727.8",
"protein_id": "ENSP00000352762.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 341,
"cds_start": -4,
"cds_end": null,
"cds_length": 1026,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1531,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "NM_001008860.3",
"protein_id": "NP_001008860.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3105,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "NM_001008892.3",
"protein_id": "NP_001008892.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2969,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "NM_001184889.2",
"protein_id": "NP_001171818.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
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"cds_length": 1083,
"cdna_start": null,
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"cdna_length": 3452,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "NM_001437491.1",
"protein_id": "NP_001424420.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3091,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "NM_001437498.1",
"protein_id": "NP_001424427.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 360,
"cds_start": -4,
"cds_end": null,
"cds_length": 1083,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3222,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "ENST00000674173.1",
"protein_id": "ENSP00000501408.1",
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"aa_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 4,
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"gene_symbol": "NIPA2",
"gene_hgnc_id": 17044,
"hgvs_c": "c.197-268C>T",
"hgvs_p": null,
"transcript": "ENST00000674289.1",
"protein_id": "ENSP00000501412.1",
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},
{
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],
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"gene_symbol": "NIPA2",
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},
{
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],
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"gene_symbol": "NIPA2",
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"hgvs_c": "c.197-268C>T",
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},
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],
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"gene_symbol": "NIPA2",
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"hgvs_c": "c.140-268C>T",
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"transcript": "NM_001008894.3",
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},
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],
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},
{
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],
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"gene_symbol": "NIPA2",
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"gene_symbol": "NIPA2",
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"hgvs_c": "c.140-268C>T",
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"transcript": "ENST00000398014.7",
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},
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],
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"gene_symbol": "NIPA2",
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"hgvs_c": "c.140-268C>T",
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"transcript": "ENST00000539711.2",
"protein_id": "ENSP00000437746.2",
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},
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],
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"gene_symbol": "NIPA2",
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],
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},
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],
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"gene_symbol": "NIPA2",
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"hgvs_c": "c.197-268C>T",
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"transcript": "XM_005272550.4",
"protein_id": "XP_005272607.1",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "NIPA2",
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"hgvs_c": "c.197-268C>T",
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"phenotype_combined": "not provided",
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}
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}