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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-25278417-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=25278417&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 25278417,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000424333.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 54,
"intron_rank": 52,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.5729-430C>T",
"hgvs_p": null,
"transcript": "ENST00000424333.6",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7315,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.447-426C>T",
"hgvs_p": null,
"transcript": "ENST00000554726.2",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1168,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.841-430C>T",
"hgvs_p": null,
"transcript": "ENST00000452731.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1064,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.4095-430C>T",
"hgvs_p": null,
"transcript": "ENST00000453082.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6087,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.3589-430C>T",
"hgvs_p": null,
"transcript": "ENST00000652996.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3733,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.2494-430C>T",
"hgvs_p": null,
"transcript": "ENST00000653389.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4080,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 59,
"intron_rank": 57,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.6137-430C>T",
"hgvs_p": null,
"transcript": "ENST00000653489.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7723,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": 34,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.3165-430C>T",
"hgvs_p": null,
"transcript": "ENST00000654023.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4751,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.2502-430C>T",
"hgvs_p": null,
"transcript": "ENST00000654984.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3191,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.2153-430C>T",
"hgvs_p": null,
"transcript": "ENST00000656009.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2838,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 57,
"intron_rank": 55,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.5419-430C>T",
"hgvs_p": null,
"transcript": "ENST00000656420.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.2449-430C>T",
"hgvs_p": null,
"transcript": "ENST00000656450.1",
"protein_id": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 8,
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"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.1256-430C>T",
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"transcript": "ENST00000656474.1",
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},
{
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"strand": true,
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],
"exon_rank": null,
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"gene_symbol": "SNHG14",
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"hgvs_c": "n.503-430C>T",
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},
{
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],
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 22,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.2693-430C>T",
"hgvs_p": null,
"transcript": "ENST00000660376.1",
"protein_id": null,
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},
{
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],
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"gene_symbol": "SNHG14",
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},
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],
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"exon_count": 9,
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"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.1026-430C>T",
"hgvs_p": null,
"transcript": "ENST00000661110.1",
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},
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],
"exon_rank": null,
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"exon_count": 40,
"intron_rank": 39,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.3735-430C>T",
"hgvs_p": null,
"transcript": "ENST00000661305.1",
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},
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],
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"gene_symbol": "SNHG14",
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],
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"gene_symbol": "SNHG14",
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},
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],
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
"gene_hgnc_id": 37462,
"hgvs_c": "n.2681-430C>T",
"hgvs_p": null,
"transcript": "ENST00000664763.1",
"protein_id": null,
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 40,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "SNHG14",
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{
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}