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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-28014821-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=28014821&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 28014821,
"ref": "G",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "ENST00000354638.8",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "NM_000275.3",
"protein_id": "NP_000266.2",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 838,
"cds_start": 999,
"cds_end": null,
"cds_length": 2517,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3143,
"mane_select": "ENST00000354638.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "ENST00000354638.8",
"protein_id": "ENSP00000346659.3",
"transcript_support_level": 1,
"aa_start": 333,
"aa_end": null,
"aa_length": 838,
"cds_start": 999,
"cds_end": null,
"cds_length": 2517,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3143,
"mane_select": "NM_000275.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "ENST00000353809.9",
"protein_id": "ENSP00000261276.8",
"transcript_support_level": 1,
"aa_start": 333,
"aa_end": null,
"aa_length": 814,
"cds_start": 999,
"cds_end": null,
"cds_length": 2445,
"cdna_start": 1109,
"cdna_end": null,
"cdna_length": 3068,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "NM_001300984.2",
"protein_id": "NP_001287913.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 814,
"cds_start": 999,
"cds_end": null,
"cds_length": 2445,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3071,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022255.2",
"protein_id": "XP_016877744.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 860,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2583,
"cdna_start": 2365,
"cdna_end": null,
"cdna_length": 4438,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_011521640.3",
"protein_id": "XP_011519942.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 852,
"cds_start": 999,
"cds_end": null,
"cds_length": 2559,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3185,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022256.2",
"protein_id": "XP_016877745.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 846,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2541,
"cdna_start": 3317,
"cdna_end": null,
"cdna_length": 5348,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022257.2",
"protein_id": "XP_016877746.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 836,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2511,
"cdna_start": 3318,
"cdna_end": null,
"cdna_length": 5319,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022258.2",
"protein_id": "XP_016877747.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 835,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2508,
"cdna_start": 3320,
"cdna_end": null,
"cdna_length": 5074,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_047432605.1",
"protein_id": "XP_047288561.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 828,
"cds_start": 999,
"cds_end": null,
"cds_length": 2487,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3113,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_047432606.1",
"protein_id": "XP_047288562.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 827,
"cds_start": 999,
"cds_end": null,
"cds_length": 2484,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 2866,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022259.2",
"protein_id": "XP_016877748.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 822,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2469,
"cdna_start": 3316,
"cdna_end": null,
"cdna_length": 5275,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022260.2",
"protein_id": "XP_016877749.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 814,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2445,
"cdna_start": 3319,
"cdna_end": null,
"cdna_length": 5254,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_047432607.1",
"protein_id": "XP_047288563.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 811,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2436,
"cdna_start": 3319,
"cdna_end": null,
"cdna_length": 5001,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_047432608.1",
"protein_id": "XP_047288564.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 806,
"cds_start": 999,
"cds_end": null,
"cds_length": 2421,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3047,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_047432609.1",
"protein_id": "XP_047288565.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 803,
"cds_start": 999,
"cds_end": null,
"cds_length": 2412,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 2794,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_047432610.1",
"protein_id": "XP_047288566.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 800,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2403,
"cdna_start": 3316,
"cdna_end": null,
"cdna_length": 5209,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.828C>T",
"hgvs_p": "p.Ile276Ile",
"transcript": "XM_017022261.2",
"protein_id": "XP_016877750.1",
"transcript_support_level": null,
"aa_start": 276,
"aa_end": null,
"aa_length": 795,
"cds_start": 828,
"cds_end": null,
"cds_length": 2388,
"cdna_start": 1605,
"cdna_end": null,
"cdna_length": 3678,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022262.2",
"protein_id": "XP_016877751.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 793,
"cds_start": 1023,
"cds_end": null,
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"cdna_start": 3321,
"cdna_end": null,
"cdna_length": 5164,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_047432611.1",
"protein_id": "XP_047288567.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 792,
"cds_start": 999,
"cds_end": null,
"cds_length": 2379,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 3005,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.1023C>T",
"hgvs_p": "p.Ile341Ile",
"transcript": "XM_017022263.2",
"protein_id": "XP_016877752.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 791,
"cds_start": 1023,
"cds_end": null,
"cds_length": 2376,
"cdna_start": 3318,
"cdna_end": null,
"cdna_length": 5184,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile",
"transcript": "XM_047432612.1",
"protein_id": "XP_047288568.1",
"transcript_support_level": null,
"aa_start": 333,
"aa_end": null,
"aa_length": 785,
"cds_start": 999,
"cds_end": null,
"cds_length": 2358,
"cdna_start": 1112,
"cdna_end": null,
"cdna_length": 2955,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
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{
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{
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{
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{
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{
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},
{
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},
{
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],
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}
],
"gene_symbol": "OCA2",
"gene_hgnc_id": 8101,
"dbsnp": "rs376454436",
"frequency_reference_population": 0.000022305607,
"hom_count_reference_population": 0,
"allele_count_reference_population": 36,
"gnomad_exomes_af": 0.0000212064,
"gnomad_genomes_af": 0.0000328684,
"gnomad_exomes_ac": 31,
"gnomad_genomes_ac": 5,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.7400000095367432,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.74,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.389,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7"
],
"verdict": "Benign",
"transcript": "ENST00000354638.8",
"gene_symbol": "OCA2",
"hgnc_id": 8101,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.999C>T",
"hgvs_p": "p.Ile333Ile"
}
],
"clinvar_disease": "not provided,not specified",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:2",
"phenotype_combined": "not specified|not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}