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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 15-34792275-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=34792275&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "15",
      "pos": 34792275,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_005159.5",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "NM_005159.5",
          "protein_id": "NP_005150.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 689,
          "cdna_end": null,
          "cdna_length": 1382,
          "mane_select": "ENST00000290378.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_005159.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "ENST00000290378.6",
          "protein_id": "ENSP00000290378.4",
          "transcript_support_level": 1,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 689,
          "cdna_end": null,
          "cdna_length": 1382,
          "mane_select": "NM_005159.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000290378.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.734G>A",
          "hgvs_p": "p.Arg245His",
          "transcript": "ENST00000713613.1",
          "protein_id": "ENSP00000518909.1",
          "transcript_support_level": null,
          "aa_start": 245,
          "aa_end": null,
          "aa_length": 414,
          "cds_start": 734,
          "cds_end": null,
          "cds_length": 1245,
          "cdna_start": 800,
          "cdna_end": null,
          "cdna_length": 1498,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000713613.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.629G>A",
          "hgvs_p": "p.Arg210His",
          "transcript": "ENST00000868408.1",
          "protein_id": "ENSP00000538467.1",
          "transcript_support_level": null,
          "aa_start": 210,
          "aa_end": null,
          "aa_length": 379,
          "cds_start": 629,
          "cds_end": null,
          "cds_length": 1140,
          "cdna_start": 695,
          "cdna_end": null,
          "cdna_length": 1393,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000868408.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "NM_001406482.1",
          "protein_id": "NP_001393411.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 723,
          "cdna_end": null,
          "cdna_length": 1416,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406482.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "NM_001406483.1",
          "protein_id": "NP_001393412.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 1037,
          "cdna_end": null,
          "cdna_length": 1730,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406483.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "ENST00000713610.1",
          "protein_id": "ENSP00000518905.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 831,
          "cdna_end": null,
          "cdna_length": 1504,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000713610.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "ENST00000713615.1",
          "protein_id": "ENSP00000518911.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 742,
          "cdna_end": null,
          "cdna_length": 1435,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000713615.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "ENST00000868405.1",
          "protein_id": "ENSP00000538464.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 1364,
          "cdna_end": null,
          "cdna_length": 2063,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000868405.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "ENST00000953688.1",
          "protein_id": "ENSP00000623747.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 708,
          "cdna_end": null,
          "cdna_length": 1400,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000953688.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.614G>A",
          "hgvs_p": "p.Arg205His",
          "transcript": "ENST00000920920.1",
          "protein_id": "ENSP00000590979.1",
          "transcript_support_level": null,
          "aa_start": 205,
          "aa_end": null,
          "aa_length": 374,
          "cds_start": 614,
          "cds_end": null,
          "cds_length": 1125,
          "cdna_start": 848,
          "cdna_end": null,
          "cdna_length": 1546,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000920920.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "ENST00000868406.1",
          "protein_id": "ENSP00000538465.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 352,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1059,
          "cdna_start": 689,
          "cdna_end": null,
          "cdna_length": 1312,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000868406.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.488G>A",
          "hgvs_p": "p.Arg163His",
          "transcript": "NM_001406484.1",
          "protein_id": "NP_001393413.1",
          "transcript_support_level": null,
          "aa_start": 163,
          "aa_end": null,
          "aa_length": 332,
          "cds_start": 488,
          "cds_end": null,
          "cds_length": 999,
          "cdna_start": 770,
          "cdna_end": null,
          "cdna_length": 1463,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406484.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.461G>A",
          "hgvs_p": "p.Arg154His",
          "transcript": "ENST00000868407.1",
          "protein_id": "ENSP00000538466.1",
          "transcript_support_level": null,
          "aa_start": 154,
          "aa_end": null,
          "aa_length": 323,
          "cds_start": 461,
          "cds_end": null,
          "cds_length": 972,
          "cdna_start": 527,
          "cdna_end": null,
          "cdna_length": 1225,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000868407.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.182G>A",
          "hgvs_p": "p.Arg61His",
          "transcript": "NM_001406485.1",
          "protein_id": "NP_001393414.1",
          "transcript_support_level": null,
          "aa_start": 61,
          "aa_end": null,
          "aa_length": 230,
          "cds_start": 182,
          "cds_end": null,
          "cds_length": 693,
          "cdna_start": 717,
          "cdna_end": null,
          "cdna_length": 1410,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406485.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His",
          "transcript": "XM_047432979.1",
          "protein_id": "XP_047288935.1",
          "transcript_support_level": null,
          "aa_start": 208,
          "aa_end": null,
          "aa_length": 377,
          "cds_start": 623,
          "cds_end": null,
          "cds_length": 1134,
          "cdna_start": 1052,
          "cdna_end": null,
          "cdna_length": 1745,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047432979.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.617-24G>A",
          "hgvs_p": null,
          "transcript": "ENST00000953689.1",
          "protein_id": "ENSP00000623748.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 367,
          "cds_start": null,
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          "cds_length": 1104,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1329,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000953689.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "c.616+133G>A",
          "hgvs_p": null,
          "transcript": "ENST00000713616.1",
          "protein_id": "ENSP00000518912.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 313,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 942,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1190,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000713616.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "n.313G>A",
          "hgvs_p": null,
          "transcript": "ENST00000557860.1",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 636,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000557860.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACTC1",
          "gene_hgnc_id": 143,
          "hgvs_c": "n.729G>A",
          "hgvs_p": null,
          "transcript": "ENST00000560563.2",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2339,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000560563.2"
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        {
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      "computational_score_selected": 0.6812849044799805,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "CardioboostCm",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.606,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.8744,
      "alphamissense_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 6.156,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_score": null,
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      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM1,BS2",
      "acmg_by_gene": [
        {
          "score": -2,
          "benign_score": 4,
          "pathogenic_score": 2,
          "criteria": [
            "PM1",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_005159.5",
          "gene_symbol": "ACTC1",
          "hgnc_id": 143,
          "effects": [
            "missense_variant"
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          "inheritance_mode": "AD",
          "hgvs_c": "c.623G>A",
          "hgvs_p": "p.Arg208His"
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        {
          "score": 2,
          "benign_score": 0,
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          "criteria": [
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          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000503496.6",
          "gene_symbol": "GJD2-DT",
          "hgnc_id": 55560,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.299+14844C>T",
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      ],
      "clinvar_disease": "ACTC1-related disorder,Atrial septal defect 5,Cardiomyopathy,Cardiovascular phenotype,Dilated cardiomyopathy 1R,Hypertrophic cardiomyopathy,Hypertrophic cardiomyopathy 11,Left ventricular noncompaction 1,not provided,not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:7 O:1",
      "phenotype_combined": "not specified|Atrial septal defect 5;Dilated cardiomyopathy 1R;Hypertrophic cardiomyopathy 11|Cardiomyopathy|not provided|Cardiovascular phenotype|ACTC1-related disorder|Hypertrophic cardiomyopathy|Atrial septal defect 5;Dilated cardiomyopathy 1R;Left ventricular noncompaction 1;Hypertrophic cardiomyopathy 11",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.