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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-44379729-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=44379729&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 44379729,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_138423.4",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.842G>T",
"hgvs_p": "p.Ser281Ile",
"transcript": "NM_138423.4",
"protein_id": "NP_612432.2",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 436,
"cds_start": 842,
"cds_end": null,
"cds_length": 1311,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000299957.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_138423.4"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.842G>T",
"hgvs_p": "p.Ser281Ile",
"transcript": "ENST00000299957.11",
"protein_id": "ENSP00000299957.6",
"transcript_support_level": 1,
"aa_start": 281,
"aa_end": null,
"aa_length": 436,
"cds_start": 842,
"cds_end": null,
"cds_length": 1311,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_138423.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000299957.11"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.842G>T",
"hgvs_p": "p.Ser281Ile",
"transcript": "ENST00000345795.6",
"protein_id": "ENSP00000335063.4",
"transcript_support_level": 1,
"aa_start": 281,
"aa_end": null,
"aa_length": 380,
"cds_start": 842,
"cds_end": null,
"cds_length": 1143,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000345795.6"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.827G>T",
"hgvs_p": "p.Ser276Ile",
"transcript": "ENST00000915850.1",
"protein_id": "ENSP00000585909.1",
"transcript_support_level": null,
"aa_start": 276,
"aa_end": null,
"aa_length": 431,
"cds_start": 827,
"cds_end": null,
"cds_length": 1296,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000915850.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.761G>T",
"hgvs_p": "p.Ser254Ile",
"transcript": "ENST00000892422.1",
"protein_id": "ENSP00000562481.1",
"transcript_support_level": null,
"aa_start": 254,
"aa_end": null,
"aa_length": 409,
"cds_start": 761,
"cds_end": null,
"cds_length": 1230,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892422.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.842G>T",
"hgvs_p": "p.Ser281Ile",
"transcript": "ENST00000892429.1",
"protein_id": "ENSP00000562488.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 409,
"cds_start": 842,
"cds_end": null,
"cds_length": 1230,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892429.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.869G>T",
"hgvs_p": "p.Ser290Ile",
"transcript": "ENST00000892426.1",
"protein_id": "ENSP00000562485.1",
"transcript_support_level": null,
"aa_start": 290,
"aa_end": null,
"aa_length": 389,
"cds_start": 869,
"cds_end": null,
"cds_length": 1170,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892426.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.842G>T",
"hgvs_p": "p.Ser281Ile",
"transcript": "NM_177974.3",
"protein_id": "NP_816929.1",
"transcript_support_level": null,
"aa_start": 281,
"aa_end": null,
"aa_length": 380,
"cds_start": 842,
"cds_end": null,
"cds_length": 1143,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_177974.3"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.593G>T",
"hgvs_p": "p.Ser198Ile",
"transcript": "ENST00000892428.1",
"protein_id": "ENSP00000562487.1",
"transcript_support_level": null,
"aa_start": 198,
"aa_end": null,
"aa_length": 353,
"cds_start": 593,
"cds_end": null,
"cds_length": 1062,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892428.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.503G>T",
"hgvs_p": "p.Ser168Ile",
"transcript": "ENST00000951963.1",
"protein_id": "ENSP00000622022.1",
"transcript_support_level": null,
"aa_start": 168,
"aa_end": null,
"aa_length": 323,
"cds_start": 503,
"cds_end": null,
"cds_length": 972,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000951963.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.485G>T",
"hgvs_p": "p.Ser162Ile",
"transcript": "ENST00000650436.1",
"protein_id": "ENSP00000496905.1",
"transcript_support_level": null,
"aa_start": 162,
"aa_end": null,
"aa_length": 317,
"cds_start": 485,
"cds_end": null,
"cds_length": 954,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000650436.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.593G>T",
"hgvs_p": "p.Ser198Ile",
"transcript": "ENST00000892427.1",
"protein_id": "ENSP00000562486.1",
"transcript_support_level": null,
"aa_start": 198,
"aa_end": null,
"aa_length": 297,
"cds_start": 593,
"cds_end": null,
"cds_length": 894,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892427.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.422G>T",
"hgvs_p": "p.Ser141Ile",
"transcript": "ENST00000892423.1",
"protein_id": "ENSP00000562482.1",
"transcript_support_level": null,
"aa_start": 141,
"aa_end": null,
"aa_length": 296,
"cds_start": 422,
"cds_end": null,
"cds_length": 891,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892423.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.422G>T",
"hgvs_p": "p.Ser141Ile",
"transcript": "ENST00000892424.1",
"protein_id": "ENSP00000562483.1",
"transcript_support_level": null,
"aa_start": 141,
"aa_end": null,
"aa_length": 240,
"cds_start": 422,
"cds_end": null,
"cds_length": 723,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892424.1"
},
{
"aa_ref": "S",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.182G>T",
"hgvs_p": "p.Ser61Ile",
"transcript": "ENST00000558847.1",
"protein_id": "ENSP00000453465.1",
"transcript_support_level": 3,
"aa_start": 61,
"aa_end": null,
"aa_length": 160,
"cds_start": 182,
"cds_end": null,
"cds_length": 483,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000558847.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "c.383-33607G>T",
"hgvs_p": null,
"transcript": "ENST00000892425.1",
"protein_id": "ENSP00000562484.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 150,
"cds_start": null,
"cds_end": null,
"cds_length": 453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000892425.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"hgvs_c": "n.2545G>T",
"hgvs_p": null,
"transcript": "NR_157849.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_157849.2"
}
],
"gene_symbol": "GOLM2",
"gene_hgnc_id": 24892,
"dbsnp": null,
"frequency_reference_population": 0.0000014062086,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000140621,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.14311322569847107,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.048,
"revel_prediction": "Benign",
"alphamissense_score": 0.0773,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.35,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.171,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_138423.4",
"gene_symbol": "GOLM2",
"hgnc_id": 24892,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.842G>T",
"hgvs_p": "p.Ser281Ile"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}