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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-48738468-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=48738468&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 48738468,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "NM_001194998.2",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4914A>G",
"hgvs_p": "p.Pro1638Pro",
"transcript": "NM_001194998.2",
"protein_id": "NP_001181927.1",
"transcript_support_level": null,
"aa_start": 1638,
"aa_end": null,
"aa_length": 1710,
"cds_start": 4914,
"cds_end": null,
"cds_length": 5133,
"cdna_start": 5030,
"cdna_end": null,
"cdna_length": 5560,
"mane_select": "ENST00000380950.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001194998.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4914A>G",
"hgvs_p": "p.Pro1638Pro",
"transcript": "ENST00000380950.7",
"protein_id": "ENSP00000370337.2",
"transcript_support_level": 1,
"aa_start": 1638,
"aa_end": null,
"aa_length": 1710,
"cds_start": 4914,
"cds_end": null,
"cds_length": 5133,
"cdna_start": 5030,
"cdna_end": null,
"cdna_length": 5560,
"mane_select": "NM_001194998.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380950.7"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4746A>G",
"hgvs_p": "p.Pro1582Pro",
"transcript": "ENST00000399334.7",
"protein_id": "ENSP00000382271.3",
"transcript_support_level": 1,
"aa_start": 1582,
"aa_end": null,
"aa_length": 1654,
"cds_start": 4746,
"cds_end": null,
"cds_length": 4965,
"cdna_start": 4780,
"cdna_end": null,
"cdna_length": 5097,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000399334.7"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4746A>G",
"hgvs_p": "p.Pro1582Pro",
"transcript": "NM_014985.4",
"protein_id": "NP_055800.2",
"transcript_support_level": null,
"aa_start": 1582,
"aa_end": null,
"aa_length": 1654,
"cds_start": 4746,
"cds_end": null,
"cds_length": 4965,
"cdna_start": 4862,
"cdna_end": null,
"cdna_length": 5392,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014985.4"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4914A>G",
"hgvs_p": "p.Pro1638Pro",
"transcript": "XM_006720437.4",
"protein_id": "XP_006720500.1",
"transcript_support_level": null,
"aa_start": 1638,
"aa_end": null,
"aa_length": 1710,
"cds_start": 4914,
"cds_end": null,
"cds_length": 5133,
"cdna_start": 5297,
"cdna_end": null,
"cdna_length": 5827,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006720437.4"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4884A>G",
"hgvs_p": "p.Pro1628Pro",
"transcript": "XM_011521373.4",
"protein_id": "XP_011519675.1",
"transcript_support_level": null,
"aa_start": 1628,
"aa_end": null,
"aa_length": 1700,
"cds_start": 4884,
"cds_end": null,
"cds_length": 5103,
"cdna_start": 5000,
"cdna_end": null,
"cdna_length": 5530,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521373.4"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4716A>G",
"hgvs_p": "p.Pro1572Pro",
"transcript": "XM_024449875.2",
"protein_id": "XP_024305643.1",
"transcript_support_level": null,
"aa_start": 1572,
"aa_end": null,
"aa_length": 1644,
"cds_start": 4716,
"cds_end": null,
"cds_length": 4935,
"cdna_start": 4832,
"cdna_end": null,
"cdna_length": 5362,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024449875.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.2949A>G",
"hgvs_p": "p.Pro983Pro",
"transcript": "XM_011521381.3",
"protein_id": "XP_011519683.1",
"transcript_support_level": null,
"aa_start": 983,
"aa_end": null,
"aa_length": 1055,
"cds_start": 2949,
"cds_end": null,
"cds_length": 3168,
"cdna_start": 4020,
"cdna_end": null,
"cdna_length": 4550,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521381.3"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.2949A>G",
"hgvs_p": "p.Pro983Pro",
"transcript": "XM_017022015.2",
"protein_id": "XP_016877504.1",
"transcript_support_level": null,
"aa_start": 983,
"aa_end": null,
"aa_length": 1055,
"cds_start": 2949,
"cds_end": null,
"cds_length": 3168,
"cdna_start": 3202,
"cdna_end": null,
"cdna_length": 3732,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022015.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.*784A>G",
"hgvs_p": null,
"transcript": "XM_011521379.4",
"protein_id": "XP_011519681.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1341,
"cds_start": null,
"cds_end": null,
"cds_length": 4026,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5456,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521379.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4093+3133A>G",
"hgvs_p": null,
"transcript": "XM_011521374.4",
"protein_id": "XP_011519676.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1401,
"cds_start": null,
"cds_end": null,
"cds_length": 4206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4442,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521374.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4064-1247A>G",
"hgvs_p": null,
"transcript": "XM_011521375.4",
"protein_id": "XP_011519677.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1397,
"cds_start": null,
"cds_end": null,
"cds_length": 4194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 11819,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521375.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.4063+3163A>G",
"hgvs_p": null,
"transcript": "XM_047432252.1",
"protein_id": "XP_047288208.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1391,
"cds_start": null,
"cds_end": null,
"cds_length": 4176,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4412,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432252.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.3925+3133A>G",
"hgvs_p": null,
"transcript": "XM_047432253.1",
"protein_id": "XP_047288209.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1345,
"cds_start": null,
"cds_end": null,
"cds_length": 4038,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4274,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432253.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 25,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "c.3895+3163A>G",
"hgvs_p": null,
"transcript": "XM_047432254.1",
"protein_id": "XP_047288210.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1335,
"cds_start": null,
"cds_end": null,
"cds_length": 4008,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4244,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432254.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "n.142+3163A>G",
"hgvs_p": null,
"transcript": "ENST00000561245.1",
"protein_id": "ENSP00000453591.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 577,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000561245.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": 26,
"intron_rank_end": null,
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"hgvs_c": "n.4180-1247A>G",
"hgvs_p": null,
"transcript": "XR_931769.4",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4443,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_931769.4"
}
],
"gene_symbol": "CEP152",
"gene_hgnc_id": 29298,
"dbsnp": "rs150910683",
"frequency_reference_population": 0.00079108437,
"hom_count_reference_population": 5,
"allele_count_reference_population": 1277,
"gnomad_exomes_af": 0.000409063,
"gnomad_genomes_af": 0.00445649,
"gnomad_exomes_ac": 598,
"gnomad_genomes_ac": 679,
"gnomad_exomes_homalt": 4,
"gnomad_genomes_homalt": 1,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8199999928474426,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.82,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.092,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -21,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
"acmg_by_gene": [
{
"score": -21,
"benign_score": 21,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_001194998.2",
"gene_symbol": "CEP152",
"hgnc_id": 29298,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.4914A>G",
"hgvs_p": "p.Pro1638Pro"
}
],
"clinvar_disease": " autosomal recessive, primary,Microcephaly 9,Seckel syndrome 5,not provided,not specified",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:2 B:4",
"phenotype_combined": "not specified|Seckel syndrome 5|Microcephaly 9, primary, autosomal recessive|not provided",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}