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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-54013210-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=54013210&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 54013210,
"ref": "C",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001080534.3",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "NM_001080534.3",
"protein_id": "NP_001074003.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2214,
"cds_start": 307,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000260323.16",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001080534.3"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "ENST00000260323.16",
"protein_id": "ENSP00000260323.11",
"transcript_support_level": 5,
"aa_start": 103,
"aa_end": null,
"aa_length": 2214,
"cds_start": 307,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001080534.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000260323.16"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "NM_001329919.2",
"protein_id": "NP_001316848.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2212,
"cds_start": 307,
"cds_end": null,
"cds_length": 6639,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001329919.2"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "ENST00000647821.1",
"protein_id": "ENSP00000497525.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2212,
"cds_start": 307,
"cds_end": null,
"cds_length": 6639,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000647821.1"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "XM_017022220.2",
"protein_id": "XP_016877709.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2214,
"cds_start": 307,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022220.2"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "XM_017022221.2",
"protein_id": "XP_016877710.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2214,
"cds_start": 307,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022221.2"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 35,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "XM_017022222.2",
"protein_id": "XP_016877711.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2214,
"cds_start": 307,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022222.2"
},
{
"aa_ref": "Q",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys",
"transcript": "XM_047432538.1",
"protein_id": "XP_047288494.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 2214,
"cds_start": 307,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432538.1"
}
],
"gene_symbol": "UNC13C",
"gene_hgnc_id": 23149,
"dbsnp": "rs1354196839",
"frequency_reference_population": 0.0000012394569,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 6.84229e-7,
"gnomad_genomes_af": 0.00000657419,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.12317416071891785,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.17,
"revel_prediction": "Benign",
"alphamissense_score": 0.0729,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.33,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 3.738,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001080534.3",
"gene_symbol": "UNC13C",
"hgnc_id": 23149,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.307C>A",
"hgvs_p": "p.Gln103Lys"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}