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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-57263171-GA-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=57263171&ref=GA&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 57263171,
"ref": "GA",
"alt": "G",
"effect": "frameshift_variant",
"transcript": "NM_207036.2",
"consequences": [
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "NM_207037.2",
"protein_id": "NP_996920.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000333725.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_207037.2"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000333725.10",
"protein_id": "ENSP00000331057.6",
"transcript_support_level": 1,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_207037.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000333725.10"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1574delA",
"hgvs_p": "p.Lys525fs",
"transcript": "ENST00000267811.9",
"protein_id": "ENSP00000267811.5",
"transcript_support_level": 1,
"aa_start": 525,
"aa_end": null,
"aa_length": 682,
"cds_start": 1574,
"cds_end": null,
"cds_length": 2049,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000267811.9"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1574delA",
"hgvs_p": "p.Lys525fs",
"transcript": "ENST00000557843.5",
"protein_id": "ENSP00000453737.1",
"transcript_support_level": 1,
"aa_start": 525,
"aa_end": null,
"aa_length": 682,
"cds_start": 1574,
"cds_end": null,
"cds_length": 2049,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000557843.5"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1136delA",
"hgvs_p": "p.Lys379fs",
"transcript": "ENST00000543579.5",
"protein_id": "ENSP00000440017.1",
"transcript_support_level": 1,
"aa_start": 379,
"aa_end": null,
"aa_length": 536,
"cds_start": 1136,
"cds_end": null,
"cds_length": 1611,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000543579.5"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1064delA",
"hgvs_p": "p.Lys355fs",
"transcript": "ENST00000343827.7",
"protein_id": "ENSP00000342459.3",
"transcript_support_level": 1,
"aa_start": 355,
"aa_end": null,
"aa_length": 512,
"cds_start": 1064,
"cds_end": null,
"cds_length": 1539,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000343827.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "n.680delA",
"hgvs_p": null,
"transcript": "ENST00000561449.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000561449.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "n.403-9855delA",
"hgvs_p": null,
"transcript": "ENST00000560190.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000560190.5"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000945990.1",
"protein_id": "ENSP00000616049.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 736,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2211,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000945990.1"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "NM_001322151.2",
"protein_id": "NP_001309080.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322151.2"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "NM_001322159.3",
"protein_id": "NP_001309088.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322159.3"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "NM_001322162.2",
"protein_id": "NP_001309091.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322162.2"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "NM_207036.2",
"protein_id": "NP_996919.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_207036.2"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000438423.6",
"protein_id": "ENSP00000388940.2",
"transcript_support_level": 5,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000438423.6"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000888327.1",
"protein_id": "ENSP00000558386.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000888327.1"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000888332.1",
"protein_id": "ENSP00000558391.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000888332.1"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000934199.1",
"protein_id": "ENSP00000604258.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 706,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2121,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934199.1"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "NM_001322152.2",
"protein_id": "NP_001309081.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 705,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322152.2"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1643delA",
"hgvs_p": "p.Lys548fs",
"transcript": "NM_001322161.2",
"protein_id": "NP_001309090.1",
"transcript_support_level": null,
"aa_start": 548,
"aa_end": null,
"aa_length": 705,
"cds_start": 1643,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322161.2"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000888324.1",
"protein_id": "ENSP00000558383.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 705,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000888324.1"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1643delA",
"hgvs_p": "p.Lys548fs",
"transcript": "ENST00000934194.1",
"protein_id": "ENSP00000604253.1",
"transcript_support_level": null,
"aa_start": 548,
"aa_end": null,
"aa_length": 705,
"cds_start": 1643,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934194.1"
},
{
"aa_ref": "K",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs",
"transcript": "ENST00000934197.1",
"protein_id": "ENSP00000604256.1",
"transcript_support_level": null,
"aa_start": 549,
"aa_end": null,
"aa_length": 705,
"cds_start": 1646,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934197.1"
},
{
"aa_ref": "K",
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{
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{
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],
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},
{
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],
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},
{
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{
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"consequences": [
"non_coding_transcript_exon_variant"
],
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"biotype": "pseudogene",
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},
{
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"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
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"gene_symbol": "TCF12",
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"transcript": "ENST00000561420.5",
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"biotype": "pseudogene",
"feature": "ENST00000561420.5"
}
],
"gene_symbol": "TCF12",
"gene_hgnc_id": 11623,
"dbsnp": "rs886037638",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 7.461,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 11,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5",
"acmg_by_gene": [
{
"score": 11,
"benign_score": 0,
"pathogenic_score": 11,
"criteria": [
"PVS1",
"PM2",
"PP5"
],
"verdict": "Pathogenic",
"transcript": "NM_207036.2",
"gene_symbol": "TCF12",
"hgnc_id": 11623,
"effects": [
"frameshift_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.1646delA",
"hgvs_p": "p.Lys549fs"
}
],
"clinvar_disease": "TCF12-related craniosynostosis",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "TCF12-related craniosynostosis",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}