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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-58882340-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=58882340&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 58882340,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000380516.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2996+1286C>G",
"hgvs_p": null,
"transcript": "NM_024755.4",
"protein_id": "NP_079031.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1034,
"cds_start": -4,
"cds_end": null,
"cds_length": 3105,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4168,
"mane_select": "ENST00000380516.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2996+1286C>G",
"hgvs_p": null,
"transcript": "ENST00000380516.7",
"protein_id": "ENSP00000369887.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1034,
"cds_start": -4,
"cds_end": null,
"cds_length": 3105,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4168,
"mane_select": "NM_024755.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2942+1286C>G",
"hgvs_p": null,
"transcript": "NM_001013843.3",
"protein_id": "NP_001013865.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1016,
"cds_start": -4,
"cds_end": null,
"cds_length": 3051,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4114,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.1694+1286C>G",
"hgvs_p": null,
"transcript": "ENST00000432750.5",
"protein_id": "ENSP00000411534.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 600,
"cds_start": -4,
"cds_end": null,
"cds_length": 1803,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2383,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "RNF111",
"gene_hgnc_id": 17384,
"hgvs_c": "c.-20+17038G>C",
"hgvs_p": null,
"transcript": "ENST00000559757.1",
"protein_id": "ENSP00000452919.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 130,
"cds_start": -4,
"cds_end": null,
"cds_length": 394,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 541,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.194+1286C>G",
"hgvs_p": null,
"transcript": "ENST00000560494.1",
"protein_id": "ENSP00000452805.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 100,
"cds_start": -4,
"cds_end": null,
"cds_length": 303,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 674,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.*1795+1286C>G",
"hgvs_p": null,
"transcript": "ENST00000492526.5",
"protein_id": "ENSP00000453711.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3022,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.311+1286C>G",
"hgvs_p": null,
"transcript": "ENST00000493062.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 987,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.*2250+1286C>G",
"hgvs_p": null,
"transcript": "ENST00000557924.5",
"protein_id": "ENSP00000454000.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3021,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.2443+1286C>G",
"hgvs_p": null,
"transcript": "NR_135042.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 3501,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "n.2553+1286C>G",
"hgvs_p": null,
"transcript": "NR_135043.2",
"protein_id": null,
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"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 20,
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"gene_symbol": "SLTM",
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"hgvs_c": "c.3017+1286C>G",
"hgvs_p": null,
"transcript": "XM_011522022.2",
"protein_id": "XP_011520324.2",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 20,
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"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2963+1286C>G",
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"transcript": "XM_011522023.2",
"protein_id": "XP_011520325.2",
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"cds_start": -4,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 20,
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"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2867+1286C>G",
"hgvs_p": null,
"transcript": "XM_011522024.2",
"protein_id": "XP_011520326.2",
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},
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],
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"gene_symbol": "SLTM",
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"hgvs_c": "c.2858+1286C>G",
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"transcript": "XM_011522029.3",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 19,
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"gene_symbol": "SLTM",
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"hgvs_c": "c.2846+1286C>G",
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"transcript": "XM_047433043.1",
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},
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],
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"gene_symbol": "SLTM",
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"hgvs_c": "c.2837+1286C>G",
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"transcript": "XM_017022579.2",
"protein_id": "XP_016878068.1",
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},
{
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 19,
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"gene_symbol": "SLTM",
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"hgvs_c": "c.2813+1286C>G",
"hgvs_p": null,
"transcript": "XM_047433044.1",
"protein_id": "XP_047289000.1",
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},
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"consequences": [
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],
"exon_rank": null,
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"exon_count": 20,
"intron_rank": 19,
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"gene_symbol": "SLTM",
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"hgvs_c": "c.2792+1286C>G",
"hgvs_p": null,
"transcript": "XM_017022576.2",
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],
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},
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],
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"gene_symbol": "SLTM",
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},
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"consequences": [
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],
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"intron_rank": 18,
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"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2750+1286C>G",
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"transcript": "XM_006720686.4",
"protein_id": "XP_006720749.4",
"transcript_support_level": null,
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"feature": null
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SLTM",
"gene_hgnc_id": 20709,
"hgvs_c": "c.2717+1286C>G",
"hgvs_p": null,
"transcript": "XM_011522028.2",
"protein_id": "XP_011520330.2",
"transcript_support_level": null,
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},
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{
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}
],
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}