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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-59205423-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=59205423&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 59205423,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_004998.4",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1593C>G",
"hgvs_p": "p.Ile531Met",
"transcript": "NM_004998.4",
"protein_id": "NP_004989.2",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 1108,
"cds_start": 1593,
"cds_end": null,
"cds_length": 3327,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000288235.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_004998.4"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1593C>G",
"hgvs_p": "p.Ile531Met",
"transcript": "ENST00000288235.9",
"protein_id": "ENSP00000288235.4",
"transcript_support_level": 1,
"aa_start": 531,
"aa_end": null,
"aa_length": 1108,
"cds_start": 1593,
"cds_end": null,
"cds_length": 3327,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_004998.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000288235.9"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1593C>G",
"hgvs_p": "p.Ile531Met",
"transcript": "ENST00000884343.1",
"protein_id": "ENSP00000554402.1",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 1119,
"cds_start": 1593,
"cds_end": null,
"cds_length": 3360,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884343.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 28,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1566C>G",
"hgvs_p": "p.Ile522Met",
"transcript": "ENST00000884345.1",
"protein_id": "ENSP00000554404.1",
"transcript_support_level": null,
"aa_start": 522,
"aa_end": null,
"aa_length": 1099,
"cds_start": 1566,
"cds_end": null,
"cds_length": 3300,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884345.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1512C>G",
"hgvs_p": "p.Ile504Met",
"transcript": "ENST00000884339.1",
"protein_id": "ENSP00000554398.1",
"transcript_support_level": null,
"aa_start": 504,
"aa_end": null,
"aa_length": 1081,
"cds_start": 1512,
"cds_end": null,
"cds_length": 3246,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884339.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1461C>G",
"hgvs_p": "p.Ile487Met",
"transcript": "ENST00000884338.1",
"protein_id": "ENSP00000554397.1",
"transcript_support_level": null,
"aa_start": 487,
"aa_end": null,
"aa_length": 1064,
"cds_start": 1461,
"cds_end": null,
"cds_length": 3195,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884338.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1593C>G",
"hgvs_p": "p.Ile531Met",
"transcript": "ENST00000884344.1",
"protein_id": "ENSP00000554403.1",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 1059,
"cds_start": 1593,
"cds_end": null,
"cds_length": 3180,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884344.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1425C>G",
"hgvs_p": "p.Ile475Met",
"transcript": "ENST00000884341.1",
"protein_id": "ENSP00000554400.1",
"transcript_support_level": null,
"aa_start": 475,
"aa_end": null,
"aa_length": 1052,
"cds_start": 1425,
"cds_end": null,
"cds_length": 3159,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884341.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1593C>G",
"hgvs_p": "p.Ile531Met",
"transcript": "ENST00000929057.1",
"protein_id": "ENSP00000599116.1",
"transcript_support_level": null,
"aa_start": 531,
"aa_end": null,
"aa_length": 1045,
"cds_start": 1593,
"cds_end": null,
"cds_length": 3138,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000929057.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1359C>G",
"hgvs_p": "p.Ile453Met",
"transcript": "ENST00000884340.1",
"protein_id": "ENSP00000554399.1",
"transcript_support_level": null,
"aa_start": 453,
"aa_end": null,
"aa_length": 1030,
"cds_start": 1359,
"cds_end": null,
"cds_length": 3093,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884340.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.162C>G",
"hgvs_p": "p.Ile54Met",
"transcript": "ENST00000560749.1",
"protein_id": "ENSP00000454113.1",
"transcript_support_level": 3,
"aa_start": 54,
"aa_end": null,
"aa_length": 315,
"cds_start": 162,
"cds_end": null,
"cds_length": 950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000560749.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1531-3053C>G",
"hgvs_p": null,
"transcript": "ENST00000929058.1",
"protein_id": "ENSP00000599117.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1067,
"cds_start": null,
"cds_end": null,
"cds_length": 3204,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000929058.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.1108-9856C>G",
"hgvs_p": null,
"transcript": "ENST00000884342.1",
"protein_id": "ENSP00000554401.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 911,
"cds_start": null,
"cds_end": null,
"cds_length": 2736,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884342.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "c.597+12468C>G",
"hgvs_p": null,
"transcript": "ENST00000559269.5",
"protein_id": "ENSP00000453232.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 275,
"cds_start": null,
"cds_end": null,
"cds_length": 828,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000559269.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "n.119C>G",
"hgvs_p": null,
"transcript": "ENST00000558182.5",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000558182.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"hgvs_c": "n.383C>G",
"hgvs_p": null,
"transcript": "ENST00000560642.1",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000560642.1"
}
],
"gene_symbol": "MYO1E",
"gene_hgnc_id": 7599,
"dbsnp": "rs140447165",
"frequency_reference_population": 0.008481161,
"hom_count_reference_population": 72,
"allele_count_reference_population": 13689,
"gnomad_exomes_af": 0.00870278,
"gnomad_genomes_af": 0.00635281,
"gnomad_exomes_ac": 12722,
"gnomad_genomes_ac": 967,
"gnomad_exomes_homalt": 69,
"gnomad_genomes_homalt": 3,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.01533326506614685,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.613,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.2764,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": 0.05,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 0.035,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -13,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6,BS1,BS2",
"acmg_by_gene": [
{
"score": -13,
"benign_score": 13,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_004998.4",
"gene_symbol": "MYO1E",
"hgnc_id": 7599,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.1593C>G",
"hgvs_p": "p.Ile531Met"
}
],
"clinvar_disease": "Kidney disorder,Microscopic hematuria,not provided,not specified",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "US:1 LB:4 B:1",
"phenotype_combined": "not specified|not provided|Microscopic hematuria|Kidney disorder",
"pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
"custom_annotations": null
}
],
"message": null
}