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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-64816592-CCG-TCT (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=64816592&ref=CCG&alt=TCT&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 1,
"criteria": [
"BP7"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "PIF1",
"hgnc_id": 26220,
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"inheritance_mode": "",
"pathogenic_score": 0,
"score": -1,
"transcript": "NM_001286497.2",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP7",
"acmg_score": -1,
"allele_count_reference_population": 0,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "TCT",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": null,
"bayesdelnoaf_score": null,
"chr": "15",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": null,
"computational_score_selected": null,
"computational_source_selected": null,
"consequences": [
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2690,
"cdna_start": 1946,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001286496.2",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000559239.2",
"protein_coding": true,
"protein_id": "NP_001273425.1",
"strand": false,
"transcript": "NM_001286496.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2690,
"cdna_start": 1946,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000559239.2",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001286496.2",
"protein_coding": true,
"protein_id": "ENSP00000452792.1",
"strand": false,
"transcript": "ENST00000559239.2",
"transcript_support_level": 1
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 707,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2278,
"cdna_start": 1943,
"cds_end": null,
"cds_length": 2124,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000333425.10",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000328174.6",
"strand": false,
"transcript": "ENST00000333425.10",
"transcript_support_level": 1
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2687,
"cdna_start": 1943,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000268043.8",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000268043.4",
"strand": false,
"transcript": "ENST00000268043.8",
"transcript_support_level": 1
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 707,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2257,
"cdna_start": 1922,
"cds_end": null,
"cds_length": 2124,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001286497.2",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001273426.1",
"strand": false,
"transcript": "NM_001286497.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 645,
"aa_ref": "R",
"aa_start": 620,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2668,
"cdna_start": 1924,
"cds_end": null,
"cds_length": 1938,
"cds_start": 1858,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923751.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1858_1860delCGGinsAGA",
"hgvs_p": "p.621",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593810.1",
"strand": false,
"transcript": "ENST00000923751.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2666,
"cdna_start": 1922,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_025049.4",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_079325.2",
"strand": false,
"transcript": "NM_025049.4",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2631,
"cdna_start": 1887,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 12,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000880618.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000550677.1",
"strand": false,
"transcript": "ENST00000880618.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2708,
"cdna_start": 1964,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923753.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593812.1",
"strand": false,
"transcript": "ENST00000923753.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 641,
"aa_ref": "R",
"aa_start": 616,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2943,
"cdna_start": 2199,
"cds_end": null,
"cds_length": 1926,
"cds_start": 1846,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923755.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1846_1848delCGGinsAGA",
"hgvs_p": "p.617",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593814.1",
"strand": false,
"transcript": "ENST00000923755.1",
"transcript_support_level": null
},
{
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"aa_end": null,
"aa_length": 639,
"aa_ref": "R",
"aa_start": 614,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2689,
"cdna_start": 1945,
"cds_end": null,
"cds_length": 1920,
"cds_start": 1840,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923743.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1840_1842delCGGinsAGA",
"hgvs_p": "p.615",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593802.1",
"strand": false,
"transcript": "ENST00000923743.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
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"aa_length": 639,
"aa_ref": "R",
"aa_start": 614,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2660,
"cdna_start": 1916,
"cds_end": null,
"cds_length": 1920,
"cds_start": 1840,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923757.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1840_1842delCGGinsAGA",
"hgvs_p": "p.615",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593816.1",
"strand": false,
"transcript": "ENST00000923757.1",
"transcript_support_level": null
},
{
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"aa_length": 637,
"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2684,
"cdna_start": 1940,
"cds_end": null,
"cds_length": 1914,
"cds_start": 1834,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923742.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1834_1836delCGGinsAGA",
"hgvs_p": "p.613",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593801.1",
"strand": false,
"transcript": "ENST00000923742.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 637,
"aa_ref": "R",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2678,
"cdna_start": 1934,
"cds_end": null,
"cds_length": 1914,
"cds_start": 1834,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923746.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1834_1836delCGGinsAGA",
"hgvs_p": "p.613",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593805.1",
"strand": false,
"transcript": "ENST00000923746.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
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"aa_length": 632,
"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2639,
"cdna_start": 1895,
"cds_end": null,
"cds_length": 1899,
"cds_start": 1819,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923747.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1819_1821delCGGinsAGA",
"hgvs_p": "p.608",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593806.1",
"strand": false,
"transcript": "ENST00000923747.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 632,
"aa_ref": "R",
"aa_start": 607,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2850,
"cdna_start": 2106,
"cds_end": null,
"cds_length": 1899,
"cds_start": 1819,
"consequences": [
"synonymous_variant"
],
"exon_count": 14,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923750.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1819_1821delCGGinsAGA",
"hgvs_p": "p.608",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593809.1",
"strand": false,
"transcript": "ENST00000923750.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 623,
"aa_ref": "R",
"aa_start": 598,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2612,
"cdna_start": 1868,
"cds_end": null,
"cds_length": 1872,
"cds_start": 1792,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923748.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1792_1794delCGGinsAGA",
"hgvs_p": "p.599",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593807.1",
"strand": false,
"transcript": "ENST00000923748.1",
"transcript_support_level": null
},
{
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"aa_ref": "R",
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"biotype": "protein_coding",
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"cdna_end": null,
"cdna_length": 2603,
"cdna_start": 1859,
"cds_end": null,
"cds_length": 1872,
"cds_start": 1792,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923760.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1792_1794delCGGinsAGA",
"hgvs_p": "p.599",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593819.1",
"strand": false,
"transcript": "ENST00000923760.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
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"aa_length": 603,
"aa_ref": "R",
"aa_start": 578,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2550,
"cdna_start": 1808,
"cds_end": null,
"cds_length": 1812,
"cds_start": 1732,
"consequences": [
"synonymous_variant"
],
"exon_count": 12,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923749.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1732_1734delCGGinsAGA",
"hgvs_p": "p.579",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593808.1",
"strand": false,
"transcript": "ENST00000923749.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 600,
"aa_ref": "R",
"aa_start": 575,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2546,
"cdna_start": 1799,
"cds_end": null,
"cds_length": 1803,
"cds_start": 1723,
"consequences": [
"synonymous_variant"
],
"exon_count": 13,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923745.1",
"gene_hgnc_id": 26220,
"gene_symbol": "PIF1",
"hgvs_c": "c.1723_1725delCGGinsAGA",
"hgvs_p": "p.576",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000593804.1",
"strand": false,
"transcript": "ENST00000923745.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 599,
"aa_ref": "R",
"aa_start": 574,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2527,
"cdna_start": 1783,
"cds_end": null,
"cds_length": 1800,
"cds_start": 1720,
"consequences": [
"synonymous_variant"
],
"exon_count": 12,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000923752.1",
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