← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-65259416-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=65259416&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 65259416,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_017851.6",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.960G>A",
"hgvs_p": "p.Ala320Ala",
"transcript": "NM_001316943.2",
"protein_id": "NP_001303872.1",
"transcript_support_level": null,
"aa_start": 320,
"aa_end": null,
"aa_length": 322,
"cds_start": 960,
"cds_end": null,
"cds_length": 969,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000649807.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001316943.2"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.960G>A",
"hgvs_p": "p.Ala320Ala",
"transcript": "ENST00000649807.2",
"protein_id": "ENSP00000496935.1",
"transcript_support_level": null,
"aa_start": 320,
"aa_end": null,
"aa_length": 322,
"cds_start": 960,
"cds_end": null,
"cds_length": 969,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001316943.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000649807.2"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.963G>A",
"hgvs_p": "p.Ala321Ala",
"transcript": "ENST00000261888.10",
"protein_id": "ENSP00000261888.6",
"transcript_support_level": 1,
"aa_start": 321,
"aa_end": null,
"aa_length": 323,
"cds_start": 963,
"cds_end": null,
"cds_length": 972,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000261888.10"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.1077G>A",
"hgvs_p": "p.Ala359Ala",
"transcript": "ENST00000906476.1",
"protein_id": "ENSP00000576535.1",
"transcript_support_level": null,
"aa_start": 359,
"aa_end": null,
"aa_length": 361,
"cds_start": 1077,
"cds_end": null,
"cds_length": 1086,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906476.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.996G>A",
"hgvs_p": "p.Ala332Ala",
"transcript": "ENST00000966191.1",
"protein_id": "ENSP00000636250.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 334,
"cds_start": 996,
"cds_end": null,
"cds_length": 1005,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000966191.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.963G>A",
"hgvs_p": "p.Ala321Ala",
"transcript": "NM_017851.6",
"protein_id": "NP_060321.3",
"transcript_support_level": null,
"aa_start": 321,
"aa_end": null,
"aa_length": 323,
"cds_start": 963,
"cds_end": null,
"cds_length": 972,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_017851.6"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.906G>A",
"hgvs_p": "p.Ala302Ala",
"transcript": "ENST00000906477.1",
"protein_id": "ENSP00000576536.1",
"transcript_support_level": null,
"aa_start": 302,
"aa_end": null,
"aa_length": 304,
"cds_start": 906,
"cds_end": null,
"cds_length": 915,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906477.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.903G>A",
"hgvs_p": "p.Ala301Ala",
"transcript": "ENST00000906479.1",
"protein_id": "ENSP00000576538.1",
"transcript_support_level": null,
"aa_start": 301,
"aa_end": null,
"aa_length": 303,
"cds_start": 903,
"cds_end": null,
"cds_length": 912,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906479.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.825G>A",
"hgvs_p": "p.Ala275Ala",
"transcript": "ENST00000906481.1",
"protein_id": "ENSP00000576540.1",
"transcript_support_level": null,
"aa_start": 275,
"aa_end": null,
"aa_length": 277,
"cds_start": 825,
"cds_end": null,
"cds_length": 834,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906481.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.822G>A",
"hgvs_p": "p.Ala274Ala",
"transcript": "ENST00000906478.1",
"protein_id": "ENSP00000576537.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 276,
"cds_start": 822,
"cds_end": null,
"cds_length": 831,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906478.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.756G>A",
"hgvs_p": "p.Ala252Ala",
"transcript": "ENST00000906483.1",
"protein_id": "ENSP00000576542.1",
"transcript_support_level": null,
"aa_start": 252,
"aa_end": null,
"aa_length": 254,
"cds_start": 756,
"cds_end": null,
"cds_length": 765,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906483.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.696G>A",
"hgvs_p": "p.Ala232Ala",
"transcript": "ENST00000906482.1",
"protein_id": "ENSP00000576541.1",
"transcript_support_level": null,
"aa_start": 232,
"aa_end": null,
"aa_length": 234,
"cds_start": 696,
"cds_end": null,
"cds_length": 705,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906482.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.618G>A",
"hgvs_p": "p.Ala206Ala",
"transcript": "ENST00000906480.1",
"protein_id": "ENSP00000576539.1",
"transcript_support_level": null,
"aa_start": 206,
"aa_end": null,
"aa_length": 208,
"cds_start": 618,
"cds_end": null,
"cds_length": 627,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000906480.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.615G>A",
"hgvs_p": "p.Ala205Ala",
"transcript": "NM_001316944.2",
"protein_id": "NP_001303873.1",
"transcript_support_level": null,
"aa_start": 205,
"aa_end": null,
"aa_length": 207,
"cds_start": 615,
"cds_end": null,
"cds_length": 624,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001316944.2"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.615G>A",
"hgvs_p": "p.Ala205Ala",
"transcript": "ENST00000444347.2",
"protein_id": "ENSP00000396118.2",
"transcript_support_level": 2,
"aa_start": 205,
"aa_end": null,
"aa_length": 207,
"cds_start": 615,
"cds_end": null,
"cds_length": 624,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000444347.2"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.906G>A",
"hgvs_p": "p.Ala302Ala",
"transcript": "XM_006720592.4",
"protein_id": "XP_006720655.1",
"transcript_support_level": null,
"aa_start": 302,
"aa_end": null,
"aa_length": 304,
"cds_start": 906,
"cds_end": null,
"cds_length": 915,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006720592.4"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.903G>A",
"hgvs_p": "p.Ala301Ala",
"transcript": "XM_017022386.3",
"protein_id": "XP_016877875.1",
"transcript_support_level": null,
"aa_start": 301,
"aa_end": null,
"aa_length": 303,
"cds_start": 903,
"cds_end": null,
"cds_length": 912,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022386.3"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.825G>A",
"hgvs_p": "p.Ala275Ala",
"transcript": "XM_011521742.4",
"protein_id": "XP_011520044.1",
"transcript_support_level": null,
"aa_start": 275,
"aa_end": null,
"aa_length": 277,
"cds_start": 825,
"cds_end": null,
"cds_length": 834,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521742.4"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.822G>A",
"hgvs_p": "p.Ala274Ala",
"transcript": "XM_017022387.3",
"protein_id": "XP_016877876.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 276,
"cds_start": 822,
"cds_end": null,
"cds_length": 831,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022387.3"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.756G>A",
"hgvs_p": "p.Ala252Ala",
"transcript": "XM_017022388.3",
"protein_id": "XP_016877877.1",
"transcript_support_level": null,
"aa_start": 252,
"aa_end": null,
"aa_length": 254,
"cds_start": 756,
"cds_end": null,
"cds_length": 765,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022388.3"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.753G>A",
"hgvs_p": "p.Ala251Ala",
"transcript": "XM_017022389.3",
"protein_id": "XP_016877878.1",
"transcript_support_level": null,
"aa_start": 251,
"aa_end": null,
"aa_length": 253,
"cds_start": 753,
"cds_end": null,
"cds_length": 762,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017022389.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.915+48G>A",
"hgvs_p": null,
"transcript": "XM_006720589.4",
"protein_id": "XP_006720652.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 311,
"cds_start": null,
"cds_end": null,
"cds_length": 936,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006720589.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.912+48G>A",
"hgvs_p": null,
"transcript": "XM_006720590.4",
"protein_id": "XP_006720653.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 310,
"cds_start": null,
"cds_end": null,
"cds_length": 933,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006720590.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.915+48G>A",
"hgvs_p": null,
"transcript": "XM_047432775.1",
"protein_id": "XP_047288731.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 309,
"cds_start": null,
"cds_end": null,
"cds_length": 930,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432775.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.912+48G>A",
"hgvs_p": null,
"transcript": "XM_047432776.1",
"protein_id": "XP_047288732.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 308,
"cds_start": null,
"cds_end": null,
"cds_length": 927,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432776.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.855+48G>A",
"hgvs_p": null,
"transcript": "XM_047432777.1",
"protein_id": "XP_047288733.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 291,
"cds_start": null,
"cds_end": null,
"cds_length": 876,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432777.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.777+48G>A",
"hgvs_p": null,
"transcript": "XM_024449969.2",
"protein_id": "XP_024305737.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 263,
"cds_start": null,
"cds_end": null,
"cds_length": 792,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024449969.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.705+48G>A",
"hgvs_p": null,
"transcript": "XM_047432778.1",
"protein_id": "XP_047288734.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 241,
"cds_start": null,
"cds_end": null,
"cds_length": 726,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432778.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "c.705+48G>A",
"hgvs_p": null,
"transcript": "XM_024449970.2",
"protein_id": "XP_024305738.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 239,
"cds_start": null,
"cds_end": null,
"cds_length": 720,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024449970.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.693G>A",
"hgvs_p": null,
"transcript": "ENST00000560149.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000560149.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.201+48G>A",
"hgvs_p": null,
"transcript": "ENST00000559805.1",
"protein_id": "ENSP00000457982.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000559805.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.1372+48G>A",
"hgvs_p": null,
"transcript": "XR_001751341.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_001751341.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.1372+48G>A",
"hgvs_p": null,
"transcript": "XR_001751342.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_001751342.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.1369+48G>A",
"hgvs_p": null,
"transcript": "XR_007064469.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_007064469.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.1372+48G>A",
"hgvs_p": null,
"transcript": "XR_429459.4",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_429459.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"hgvs_c": "n.1369+48G>A",
"hgvs_p": null,
"transcript": "XR_429460.4",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_429460.4"
}
],
"gene_symbol": "PARP16",
"gene_hgnc_id": 26040,
"dbsnp": "rs34957967",
"frequency_reference_population": 0.00047333114,
"hom_count_reference_population": 5,
"allele_count_reference_population": 764,
"gnomad_exomes_af": 0.000292102,
"gnomad_genomes_af": 0.00221312,
"gnomad_exomes_ac": 427,
"gnomad_genomes_ac": 337,
"gnomad_exomes_homalt": 2,
"gnomad_genomes_homalt": 3,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.699999988079071,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.029999999329447746,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.7,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.842,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.03,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -11,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Moderate,BP7,BS2",
"acmg_by_gene": [
{
"score": -11,
"benign_score": 11,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Moderate",
"BP7",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_017851.6",
"gene_symbol": "PARP16",
"hgnc_id": 26040,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.963G>A",
"hgvs_p": "p.Ala321Ala"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "B:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}