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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-71869062-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=71869062&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 71869062,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_006901.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.5980-6451A>G",
"hgvs_p": null,
"transcript": "NM_006901.4",
"protein_id": "NP_008832.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2548,
"cds_start": null,
"cds_end": null,
"cds_length": 7647,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12478,
"mane_select": "ENST00000356056.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006901.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.5980-6451A>G",
"hgvs_p": null,
"transcript": "ENST00000356056.10",
"protein_id": "ENSP00000348349.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2548,
"cds_start": null,
"cds_end": null,
"cds_length": 7647,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12478,
"mane_select": "NM_006901.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000356056.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.5980-6451A>G",
"hgvs_p": null,
"transcript": "ENST00000564571.5",
"protein_id": "ENSP00000456192.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2396,
"cds_start": null,
"cds_end": null,
"cds_length": 7191,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8111,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000564571.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.2527-6451A>G",
"hgvs_p": null,
"transcript": "ENST00000561618.5",
"protein_id": "ENSP00000457945.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1397,
"cds_start": null,
"cds_end": null,
"cds_length": 4194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4784,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000561618.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": 34,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.6112-6451A>G",
"hgvs_p": null,
"transcript": "ENST00000971716.1",
"protein_id": "ENSP00000641775.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2592,
"cds_start": null,
"cds_end": null,
"cds_length": 7779,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8576,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000971716.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": 30,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.6019-6451A>G",
"hgvs_p": null,
"transcript": "ENST00000922047.1",
"protein_id": "ENSP00000592106.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2561,
"cds_start": null,
"cds_end": null,
"cds_length": 7686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12037,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000922047.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 41,
"intron_rank": 31,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.5923-6451A>G",
"hgvs_p": null,
"transcript": "ENST00000971717.1",
"protein_id": "ENSP00000641776.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2529,
"cds_start": null,
"cds_end": null,
"cds_length": 7590,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8348,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000971717.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 44,
"intron_rank": 33,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.6196-6451A>G",
"hgvs_p": null,
"transcript": "XM_011521613.4",
"protein_id": "XP_011519915.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2638,
"cds_start": null,
"cds_end": null,
"cds_length": 7917,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 12748,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521613.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 45,
"intron_rank": 34,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.6196-6451A>G",
"hgvs_p": null,
"transcript": "XM_011521614.4",
"protein_id": "XP_011519916.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2638,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011521614.4"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 44,
"intron_rank": 33,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.6196-6451A>G",
"hgvs_p": null,
"transcript": "XM_011521615.4",
"protein_id": "XP_011519917.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 2638,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_011521615.4"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 44,
"intron_rank": 33,
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"gene_symbol": "MYO9A",
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"hgvs_c": "c.6196-6451A>G",
"hgvs_p": null,
"transcript": "XM_011521616.4",
"protein_id": "XP_011519918.1",
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"aa_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 33,
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"gene_symbol": "MYO9A",
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"hgvs_c": "c.6193-6451A>G",
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"transcript": "XM_011521617.4",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 33,
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"gene_symbol": "MYO9A",
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"protein_id": "XP_047288503.1",
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},
{
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],
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"gene_symbol": "MYO9A",
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},
{
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"strand": false,
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],
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"intron_rank": 33,
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"gene_symbol": "MYO9A",
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"hgvs_c": "c.6196-6451A>G",
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"transcript": "XM_011521618.4",
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},
{
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],
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},
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],
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"gene_symbol": "MYO9A",
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"hgvs_c": "c.6139-6451A>G",
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"transcript": "XM_011521619.4",
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},
{
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],
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"intron_rank": 33,
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"gene_symbol": "MYO9A",
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"hgvs_c": "c.6193-6451A>G",
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"transcript": "XM_047432549.1",
"protein_id": "XP_047288505.1",
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},
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],
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},
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],
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"gene_symbol": "MYO9A",
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},
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],
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"gene_symbol": "MYO9A",
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"transcript": "XM_047432552.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
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"intron_rank": 32,
"intron_rank_end": null,
"gene_symbol": "MYO9A",
"gene_hgnc_id": 7608,
"hgvs_c": "c.6139-6451A>G",
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},
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}