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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-77035884-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=77035884&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 77035884,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_001321137.1",
"consequences": [
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1068C>T",
"hgvs_p": "p.Asn356Asn",
"transcript": "NM_003978.5",
"protein_id": "NP_003969.2",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 416,
"cds_start": 1068,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000558012.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003978.5"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1068C>T",
"hgvs_p": "p.Asn356Asn",
"transcript": "ENST00000558012.6",
"protein_id": "ENSP00000452746.1",
"transcript_support_level": 1,
"aa_start": 356,
"aa_end": null,
"aa_length": 416,
"cds_start": 1068,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_003978.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000558012.6"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1011C>T",
"hgvs_p": "p.Asn337Asn",
"transcript": "ENST00000559295.5",
"protein_id": "ENSP00000452743.1",
"transcript_support_level": 1,
"aa_start": 337,
"aa_end": null,
"aa_length": 397,
"cds_start": 1011,
"cds_end": null,
"cds_length": 1194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000559295.5"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.216C>T",
"hgvs_p": "p.Asn72Asn",
"transcript": "ENST00000558870.1",
"protein_id": "ENSP00000452779.1",
"transcript_support_level": 1,
"aa_start": 72,
"aa_end": null,
"aa_length": 132,
"cds_start": 216,
"cds_end": null,
"cds_length": 399,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000558870.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "n.*43C>T",
"hgvs_p": null,
"transcript": "ENST00000559785.5",
"protein_id": "ENSP00000452986.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000559785.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "n.*1170C>T",
"hgvs_p": null,
"transcript": "ENST00000560223.5",
"protein_id": "ENSP00000454118.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000560223.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "n.*43C>T",
"hgvs_p": null,
"transcript": "ENST00000559785.5",
"protein_id": "ENSP00000452986.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000559785.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "n.*1170C>T",
"hgvs_p": null,
"transcript": "ENST00000560223.5",
"protein_id": "ENSP00000454118.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000560223.5"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1263C>T",
"hgvs_p": "p.Asn421Asn",
"transcript": "NM_001321137.1",
"protein_id": "NP_001308066.1",
"transcript_support_level": null,
"aa_start": 421,
"aa_end": null,
"aa_length": 481,
"cds_start": 1263,
"cds_end": null,
"cds_length": 1446,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321137.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1068C>T",
"hgvs_p": "p.Asn356Asn",
"transcript": "ENST00000884367.1",
"protein_id": "ENSP00000554426.1",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 416,
"cds_start": 1068,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000884367.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1059C>T",
"hgvs_p": "p.Asn353Asn",
"transcript": "NM_001411086.1",
"protein_id": "NP_001398015.1",
"transcript_support_level": null,
"aa_start": 353,
"aa_end": null,
"aa_length": 413,
"cds_start": 1059,
"cds_end": null,
"cds_length": 1242,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001411086.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1059C>T",
"hgvs_p": "p.Asn353Asn",
"transcript": "ENST00000379595.7",
"protein_id": "ENSP00000368914.3",
"transcript_support_level": 5,
"aa_start": 353,
"aa_end": null,
"aa_length": 413,
"cds_start": 1059,
"cds_end": null,
"cds_length": 1242,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000379595.7"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1041C>T",
"hgvs_p": "p.Asn347Asn",
"transcript": "NM_001321136.2",
"protein_id": "NP_001308065.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 407,
"cds_start": 1041,
"cds_end": null,
"cds_length": 1224,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321136.2"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1011C>T",
"hgvs_p": "p.Asn337Asn",
"transcript": "NM_001321135.2",
"protein_id": "NP_001308064.1",
"transcript_support_level": null,
"aa_start": 337,
"aa_end": null,
"aa_length": 397,
"cds_start": 1011,
"cds_end": null,
"cds_length": 1194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321135.2"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1125C>T",
"hgvs_p": "p.Asn375Asn",
"transcript": "XM_011522168.4",
"protein_id": "XP_011520470.1",
"transcript_support_level": null,
"aa_start": 375,
"aa_end": null,
"aa_length": 435,
"cds_start": 1125,
"cds_end": null,
"cds_length": 1308,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011522168.4"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.1116C>T",
"hgvs_p": "p.Asn372Asn",
"transcript": "XM_011522163.3",
"protein_id": "XP_011520465.1",
"transcript_support_level": null,
"aa_start": 372,
"aa_end": null,
"aa_length": 432,
"cds_start": 1116,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011522163.3"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.921C>T",
"hgvs_p": "p.Asn307Asn",
"transcript": "XM_011522165.3",
"protein_id": "XP_011520467.1",
"transcript_support_level": null,
"aa_start": 307,
"aa_end": null,
"aa_length": 367,
"cds_start": 921,
"cds_end": null,
"cds_length": 1104,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011522165.3"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.864C>T",
"hgvs_p": "p.Asn288Asn",
"transcript": "XM_047433278.1",
"protein_id": "XP_047289234.1",
"transcript_support_level": null,
"aa_start": 288,
"aa_end": null,
"aa_length": 348,
"cds_start": 864,
"cds_end": null,
"cds_length": 1047,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433278.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.702C>T",
"hgvs_p": "p.Asn234Asn",
"transcript": "XM_006720737.4",
"protein_id": "XP_006720800.1",
"transcript_support_level": null,
"aa_start": 234,
"aa_end": null,
"aa_length": 294,
"cds_start": 702,
"cds_end": null,
"cds_length": 885,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006720737.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.*43C>T",
"hgvs_p": null,
"transcript": "XM_047433276.1",
"protein_id": "XP_047289232.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 371,
"cds_start": null,
"cds_end": null,
"cds_length": 1116,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433276.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.*73C>T",
"hgvs_p": null,
"transcript": "XM_011522166.2",
"protein_id": "XP_011520468.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 358,
"cds_start": null,
"cds_end": null,
"cds_length": 1077,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011522166.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PSTPIP1",
"gene_hgnc_id": 9580,
"hgvs_c": "c.*43C>T",
"hgvs_p": null,
"transcript": "XM_047433277.1",
"protein_id": "XP_047289233.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 352,
"cds_start": null,
"cds_end": null,
"cds_length": 1059,
"cdna_start": null,
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}
],
"message": null
}