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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-78168948-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=78168948&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 78168948,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "NM_005530.3",
"consequences": [
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1044T>C",
"hgvs_p": "p.Asn348Asn",
"transcript": "NM_005530.3",
"protein_id": "NP_005521.1",
"transcript_support_level": null,
"aa_start": 348,
"aa_end": null,
"aa_length": 366,
"cds_start": 1044,
"cds_end": null,
"cds_length": 1101,
"cdna_start": 1086,
"cdna_end": null,
"cdna_length": 4083,
"mane_select": "ENST00000299518.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005530.3"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1044T>C",
"hgvs_p": "p.Asn348Asn",
"transcript": "ENST00000299518.7",
"protein_id": "ENSP00000299518.2",
"transcript_support_level": 1,
"aa_start": 348,
"aa_end": null,
"aa_length": 366,
"cds_start": 1044,
"cds_end": null,
"cds_length": 1101,
"cdna_start": 1086,
"cdna_end": null,
"cdna_length": 4083,
"mane_select": "NM_005530.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000299518.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACSBG1",
"gene_hgnc_id": 29567,
"hgvs_c": "c.*2496A>G",
"hgvs_p": null,
"transcript": "NM_015162.5",
"protein_id": "NP_055977.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 724,
"cds_start": null,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6215,
"mane_select": "ENST00000258873.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015162.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ACSBG1",
"gene_hgnc_id": 29567,
"hgvs_c": "c.*2496A>G",
"hgvs_p": null,
"transcript": "ENST00000258873.9",
"protein_id": "ENSP00000258873.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 724,
"cds_start": null,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6215,
"mane_select": "NM_015162.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000258873.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "n.992T>C",
"hgvs_p": null,
"transcript": "ENST00000558535.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2586,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000558535.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "n.1735T>C",
"hgvs_p": null,
"transcript": "ENST00000559889.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2461,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000559889.5"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1068T>C",
"hgvs_p": "p.Asn356Asn",
"transcript": "ENST00000889878.1",
"protein_id": "ENSP00000559937.1",
"transcript_support_level": null,
"aa_start": 356,
"aa_end": null,
"aa_length": 374,
"cds_start": 1068,
"cds_end": null,
"cds_length": 1125,
"cdna_start": 1092,
"cdna_end": null,
"cdna_length": 2686,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889878.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1065T>C",
"hgvs_p": "p.Asn355Asn",
"transcript": "ENST00000889873.1",
"protein_id": "ENSP00000559932.1",
"transcript_support_level": null,
"aa_start": 355,
"aa_end": null,
"aa_length": 373,
"cds_start": 1065,
"cds_end": null,
"cds_length": 1122,
"cdna_start": 1107,
"cdna_end": null,
"cdna_length": 2701,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889873.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1041T>C",
"hgvs_p": "p.Asn347Asn",
"transcript": "ENST00000889876.1",
"protein_id": "ENSP00000559935.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 365,
"cds_start": 1041,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 1072,
"cdna_end": null,
"cdna_length": 2666,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889876.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1041T>C",
"hgvs_p": "p.Asn347Asn",
"transcript": "ENST00000921734.1",
"protein_id": "ENSP00000591793.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 365,
"cds_start": 1041,
"cds_end": null,
"cds_length": 1098,
"cdna_start": 1083,
"cdna_end": null,
"cdna_length": 1388,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000921734.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1020T>C",
"hgvs_p": "p.Asn340Asn",
"transcript": "ENST00000889871.1",
"protein_id": "ENSP00000559930.1",
"transcript_support_level": null,
"aa_start": 340,
"aa_end": null,
"aa_length": 358,
"cds_start": 1020,
"cds_end": null,
"cds_length": 1077,
"cdna_start": 1081,
"cdna_end": null,
"cdna_length": 2675,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889871.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.1008T>C",
"hgvs_p": "p.Asn336Asn",
"transcript": "ENST00000889872.1",
"protein_id": "ENSP00000559931.1",
"transcript_support_level": null,
"aa_start": 336,
"aa_end": null,
"aa_length": 354,
"cds_start": 1008,
"cds_end": null,
"cds_length": 1065,
"cdna_start": 1050,
"cdna_end": null,
"cdna_length": 2644,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889872.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.984T>C",
"hgvs_p": "p.Asn328Asn",
"transcript": "ENST00000943584.1",
"protein_id": "ENSP00000613643.1",
"transcript_support_level": null,
"aa_start": 328,
"aa_end": null,
"aa_length": 346,
"cds_start": 984,
"cds_end": null,
"cds_length": 1041,
"cdna_start": 1008,
"cdna_end": null,
"cdna_length": 2601,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000943584.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.981T>C",
"hgvs_p": "p.Asn327Asn",
"transcript": "ENST00000889877.1",
"protein_id": "ENSP00000559936.1",
"transcript_support_level": null,
"aa_start": 327,
"aa_end": null,
"aa_length": 345,
"cds_start": 981,
"cds_end": null,
"cds_length": 1038,
"cdna_start": 1008,
"cdna_end": null,
"cdna_length": 2601,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889877.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.939T>C",
"hgvs_p": "p.Asn313Asn",
"transcript": "ENST00000558554.5",
"protein_id": "ENSP00000453084.1",
"transcript_support_level": 2,
"aa_start": 313,
"aa_end": null,
"aa_length": 331,
"cds_start": 939,
"cds_end": null,
"cds_length": 996,
"cdna_start": 983,
"cdna_end": null,
"cdna_length": 1595,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000558554.5"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.897T>C",
"hgvs_p": "p.Asn299Asn",
"transcript": "ENST00000889874.1",
"protein_id": "ENSP00000559933.1",
"transcript_support_level": null,
"aa_start": 299,
"aa_end": null,
"aa_length": 317,
"cds_start": 897,
"cds_end": null,
"cds_length": 954,
"cdna_start": 939,
"cdna_end": null,
"cdna_length": 2532,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889874.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.891T>C",
"hgvs_p": "p.Asn297Asn",
"transcript": "ENST00000889875.1",
"protein_id": "ENSP00000559934.1",
"transcript_support_level": null,
"aa_start": 297,
"aa_end": null,
"aa_length": 315,
"cds_start": 891,
"cds_end": null,
"cds_length": 948,
"cdna_start": 930,
"cdna_end": null,
"cdna_length": 2520,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000889875.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.207T>C",
"hgvs_p": "p.Asn69Asn",
"transcript": "ENST00000559205.1",
"protein_id": "ENSP00000453989.1",
"transcript_support_level": 4,
"aa_start": 69,
"aa_end": null,
"aa_length": 87,
"cds_start": 207,
"cds_end": null,
"cds_length": 264,
"cdna_start": 231,
"cdna_end": null,
"cdna_length": 566,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000559205.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.894T>C",
"hgvs_p": "p.Asn298Asn",
"transcript": "XM_024449911.2",
"protein_id": "XP_024305679.1",
"transcript_support_level": null,
"aa_start": 298,
"aa_end": null,
"aa_length": 316,
"cds_start": 894,
"cds_end": null,
"cds_length": 951,
"cdna_start": 1341,
"cdna_end": null,
"cdna_length": 4338,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024449911.2"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.894T>C",
"hgvs_p": "p.Asn298Asn",
"transcript": "XM_047432428.1",
"protein_id": "XP_047288384.1",
"transcript_support_level": null,
"aa_start": 298,
"aa_end": null,
"aa_length": 316,
"cds_start": 894,
"cds_end": null,
"cds_length": 951,
"cdna_start": 1598,
"cdna_end": null,
"cdna_length": 4595,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432428.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.894T>C",
"hgvs_p": "p.Asn298Asn",
"transcript": "XM_047432429.1",
"protein_id": "XP_047288385.1",
"transcript_support_level": null,
"aa_start": 298,
"aa_end": null,
"aa_length": 316,
"cds_start": 894,
"cds_end": null,
"cds_length": 951,
"cdna_start": 1853,
"cdna_end": null,
"cdna_length": 4850,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047432429.1"
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "IDH3A",
"gene_hgnc_id": 5384,
"hgvs_c": "c.717T>C",
"hgvs_p": "p.Asn239Asn",
"transcript": "XM_047432430.1",
"protein_id": "XP_047288386.1",
"transcript_support_level": null,
"aa_start": 239,
"aa_end": null,
"aa_length": 257,
"cds_start": 717,
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{
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"BP4_Strong",
"BP6_Moderate",
"BP7"
],
"verdict": "Likely_benign",
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{
"score": -4,
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"BP6_Moderate"
],
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}