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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 15-80186159-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=80186159&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "15",
      "pos": 80186159,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_000137.4",
      "consequences": [
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "NM_000137.4",
          "protein_id": "NP_000128.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1266,
          "cdna_end": null,
          "cdna_length": 1456,
          "mane_select": "ENST00000561421.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000137.4"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000561421.6",
          "protein_id": "ENSP00000453347.2",
          "transcript_support_level": 1,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1266,
          "cdna_end": null,
          "cdna_length": 1456,
          "mane_select": "NM_000137.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000561421.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "n.3238G>A",
          "hgvs_p": null,
          "transcript": "ENST00000539156.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3427,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000539156.5"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1312G>A",
          "hgvs_p": "p.Gly438Ser",
          "transcript": "ENST00000874657.1",
          "protein_id": "ENSP00000544716.1",
          "transcript_support_level": null,
          "aa_start": 438,
          "aa_end": null,
          "aa_length": 453,
          "cds_start": 1312,
          "cds_end": null,
          "cds_length": 1362,
          "cdna_start": 1365,
          "cdna_end": null,
          "cdna_length": 1555,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874657.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1312G>A",
          "hgvs_p": "p.Gly438Ser",
          "transcript": "ENST00000929198.1",
          "protein_id": "ENSP00000599257.1",
          "transcript_support_level": null,
          "aa_start": 438,
          "aa_end": null,
          "aa_length": 453,
          "cds_start": 1312,
          "cds_end": null,
          "cds_length": 1362,
          "cdna_start": 1382,
          "cdna_end": null,
          "cdna_length": 1556,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000929198.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "NM_001374377.1",
          "protein_id": "NP_001361306.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1356,
          "cdna_end": null,
          "cdna_length": 2146,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001374377.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "NM_001374380.1",
          "protein_id": "NP_001361309.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1292,
          "cdna_end": null,
          "cdna_length": 2082,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001374380.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000261755.9",
          "protein_id": "ENSP00000261755.5",
          "transcript_support_level": 5,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1287,
          "cdna_end": null,
          "cdna_length": 1471,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000261755.9"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000407106.5",
          "protein_id": "ENSP00000385080.1",
          "transcript_support_level": 5,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1365,
          "cdna_end": null,
          "cdna_length": 2152,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000407106.5"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000874652.1",
          "protein_id": "ENSP00000544711.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1401,
          "cdna_end": null,
          "cdna_length": 2232,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874652.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000874653.1",
          "protein_id": "ENSP00000544712.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1268,
          "cdna_end": null,
          "cdna_length": 1473,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874653.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000874654.1",
          "protein_id": "ENSP00000544713.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1326,
          "cdna_end": null,
          "cdna_length": 1521,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874654.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000874656.1",
          "protein_id": "ENSP00000544715.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1271,
          "cdna_end": null,
          "cdna_length": 1460,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874656.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000960159.1",
          "protein_id": "ENSP00000630218.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1343,
          "cdna_end": null,
          "cdna_length": 1771,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960159.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser",
          "transcript": "ENST00000960160.1",
          "protein_id": "ENSP00000630219.1",
          "transcript_support_level": null,
          "aa_start": 404,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1210,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": 1320,
          "cdna_end": null,
          "cdna_length": 1738,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960160.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1207G>A",
          "hgvs_p": "p.Gly403Ser",
          "transcript": "ENST00000960162.1",
          "protein_id": "ENSP00000630221.1",
          "transcript_support_level": null,
          "aa_start": 403,
          "aa_end": null,
          "aa_length": 418,
          "cds_start": 1207,
          "cds_end": null,
          "cds_length": 1257,
          "cdna_start": 1474,
          "cdna_end": null,
          "cdna_length": 1669,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960162.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1207G>A",
          "hgvs_p": "p.Gly403Ser",
          "transcript": "ENST00000960163.1",
          "protein_id": "ENSP00000630222.1",
          "transcript_support_level": null,
          "aa_start": 403,
          "aa_end": null,
          "aa_length": 418,
          "cds_start": 1207,
          "cds_end": null,
          "cds_length": 1257,
          "cdna_start": 1284,
          "cdna_end": null,
          "cdna_length": 1473,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960163.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1192G>A",
          "hgvs_p": "p.Gly398Ser",
          "transcript": "ENST00000929199.1",
          "protein_id": "ENSP00000599258.1",
          "transcript_support_level": null,
          "aa_start": 398,
          "aa_end": null,
          "aa_length": 413,
          "cds_start": 1192,
          "cds_end": null,
          "cds_length": 1242,
          "cdna_start": 1287,
          "cdna_end": null,
          "cdna_length": 1463,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000929199.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1144G>A",
          "hgvs_p": "p.Gly382Ser",
          "transcript": "ENST00000960164.1",
          "protein_id": "ENSP00000630223.1",
          "transcript_support_level": null,
          "aa_start": 382,
          "aa_end": null,
          "aa_length": 397,
          "cds_start": 1144,
          "cds_end": null,
          "cds_length": 1194,
          "cdna_start": 1198,
          "cdna_end": null,
          "cdna_length": 1379,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960164.1"
        },
        {
          "aa_ref": "G",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "FAH",
          "gene_hgnc_id": 3579,
          "hgvs_c": "c.1108G>A",
          "hgvs_p": "p.Gly370Ser",
          "transcript": "ENST00000874655.1",
          "protein_id": "ENSP00000544714.1",
          "transcript_support_level": null,
          "aa_start": 370,
          "aa_end": null,
          "aa_length": 385,
          "cds_start": 1108,
          "cds_end": null,
          "cds_length": 1158,
          "cdna_start": 1202,
          "cdna_end": null,
          "cdna_length": 1375,
          "mane_select": null,
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      ],
      "gene_symbol": "FAH",
      "gene_hgnc_id": 3579,
      "dbsnp": "rs1297118863",
      "frequency_reference_population": 0.000011152279,
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      "allele_count_reference_population": 18,
      "gnomad_exomes_af": 0.0000109451,
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      "gnomad_exomes_ac": 16,
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      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.981596827507019,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.974,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.3115,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.59,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 8.153,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_score": null,
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      "mitotip_score": null,
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      "acmg_score": 18,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PM1,PM2,PM5,PP3_Strong,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 18,
          "benign_score": 0,
          "pathogenic_score": 18,
          "criteria": [
            "PM1",
            "PM2",
            "PM5",
            "PP3_Strong",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "NM_000137.4",
          "gene_symbol": "FAH",
          "hgnc_id": 3579,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1210G>A",
          "hgvs_p": "p.Gly404Ser"
        }
      ],
      "clinvar_disease": "Tyrosinemia type I,not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:3 LP:3",
      "phenotype_combined": "Tyrosinemia type I|not provided",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.