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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 15-83030299-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=83030299&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "15",
      "pos": 83030299,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_025238.4",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.892C>G",
          "hgvs_p": "p.Arg298Gly",
          "transcript": "NM_025238.4",
          "protein_id": "NP_079514.1",
          "transcript_support_level": null,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 482,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1449,
          "cdna_start": 993,
          "cdna_end": null,
          "cdna_length": 3194,
          "mane_select": "ENST00000261721.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_025238.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.892C>G",
          "hgvs_p": "p.Arg298Gly",
          "transcript": "ENST00000261721.9",
          "protein_id": "ENSP00000261721.4",
          "transcript_support_level": 1,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 482,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1449,
          "cdna_start": 993,
          "cdna_end": null,
          "cdna_length": 3194,
          "mane_select": "NM_025238.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000261721.9"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.1009C>G",
          "hgvs_p": "p.Arg337Gly",
          "transcript": "ENST00000944296.1",
          "protein_id": "ENSP00000614355.1",
          "transcript_support_level": null,
          "aa_start": 337,
          "aa_end": null,
          "aa_length": 521,
          "cds_start": 1009,
          "cds_end": null,
          "cds_length": 1566,
          "cdna_start": 1139,
          "cdna_end": null,
          "cdna_length": 3306,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000944296.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.967C>G",
          "hgvs_p": "p.Arg323Gly",
          "transcript": "ENST00000944299.1",
          "protein_id": "ENSP00000614358.1",
          "transcript_support_level": null,
          "aa_start": 323,
          "aa_end": null,
          "aa_length": 507,
          "cds_start": 967,
          "cds_end": null,
          "cds_length": 1524,
          "cdna_start": 1061,
          "cdna_end": null,
          "cdna_length": 3206,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000944299.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.913C>G",
          "hgvs_p": "p.Arg305Gly",
          "transcript": "ENST00000876369.1",
          "protein_id": "ENSP00000546428.1",
          "transcript_support_level": null,
          "aa_start": 305,
          "aa_end": null,
          "aa_length": 489,
          "cds_start": 913,
          "cds_end": null,
          "cds_length": 1470,
          "cdna_start": 1014,
          "cdna_end": null,
          "cdna_length": 2144,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876369.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.892C>G",
          "hgvs_p": "p.Arg298Gly",
          "transcript": "ENST00000876368.1",
          "protein_id": "ENSP00000546427.1",
          "transcript_support_level": null,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 482,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1449,
          "cdna_start": 981,
          "cdna_end": null,
          "cdna_length": 3161,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876368.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.892C>G",
          "hgvs_p": "p.Arg298Gly",
          "transcript": "ENST00000876371.1",
          "protein_id": "ENSP00000546430.1",
          "transcript_support_level": null,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 433,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1302,
          "cdna_start": 993,
          "cdna_end": null,
          "cdna_length": 1969,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876371.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.715C>G",
          "hgvs_p": "p.Arg239Gly",
          "transcript": "ENST00000944298.1",
          "protein_id": "ENSP00000614357.1",
          "transcript_support_level": null,
          "aa_start": 239,
          "aa_end": null,
          "aa_length": 423,
          "cds_start": 715,
          "cds_end": null,
          "cds_length": 1272,
          "cdna_start": 807,
          "cdna_end": null,
          "cdna_length": 2974,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000944298.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.694C>G",
          "hgvs_p": "p.Arg232Gly",
          "transcript": "ENST00000876370.1",
          "protein_id": "ENSP00000546429.1",
          "transcript_support_level": null,
          "aa_start": 232,
          "aa_end": null,
          "aa_length": 416,
          "cds_start": 694,
          "cds_end": null,
          "cds_length": 1251,
          "cdna_start": 783,
          "cdna_end": null,
          "cdna_length": 1922,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000876370.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.892C>G",
          "hgvs_p": "p.Arg298Gly",
          "transcript": "NM_001011885.2",
          "protein_id": "NP_001011885.1",
          "transcript_support_level": null,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 385,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1158,
          "cdna_start": 993,
          "cdna_end": null,
          "cdna_length": 3106,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001011885.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.892C>G",
          "hgvs_p": "p.Arg298Gly",
          "transcript": "ENST00000379403.2",
          "protein_id": "ENSP00000368713.2",
          "transcript_support_level": 5,
          "aa_start": 298,
          "aa_end": null,
          "aa_length": 385,
          "cds_start": 892,
          "cds_end": null,
          "cds_length": 1158,
          "cdna_start": 892,
          "cdna_end": null,
          "cdna_length": 1467,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000379403.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.694C>G",
          "hgvs_p": "p.Arg232Gly",
          "transcript": "ENST00000929299.1",
          "protein_id": "ENSP00000599358.1",
          "transcript_support_level": null,
          "aa_start": 232,
          "aa_end": null,
          "aa_length": 367,
          "cds_start": 694,
          "cds_end": null,
          "cds_length": 1104,
          "cdna_start": 781,
          "cdna_end": null,
          "cdna_length": 2835,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000929299.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.865C>G",
          "hgvs_p": "p.Arg289Gly",
          "transcript": "ENST00000929300.1",
          "protein_id": "ENSP00000599359.1",
          "transcript_support_level": null,
          "aa_start": 289,
          "aa_end": null,
          "aa_length": 473,
          "cds_start": 865,
          "cds_end": null,
          "cds_length": 1422,
          "cdna_start": 963,
          "cdna_end": null,
          "cdna_length": 2093,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000929300.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "c.559-11446C>G",
          "hgvs_p": null,
          "transcript": "ENST00000944297.1",
          "protein_id": "ENSP00000614356.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 287,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 864,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2574,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000944297.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "n.468C>G",
          "hgvs_p": null,
          "transcript": "ENST00000558344.1",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 648,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000558344.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "n.*207C>G",
          "hgvs_p": null,
          "transcript": "ENST00000559652.5",
          "protein_id": "ENSP00000453104.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 797,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000559652.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "n.124C>G",
          "hgvs_p": null,
          "transcript": "ENST00000560015.1",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 608,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000560015.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "n.993C>G",
          "hgvs_p": null,
          "transcript": "XR_007064459.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1356,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "XR_007064459.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTBD1",
          "gene_hgnc_id": 1120,
          "hgvs_c": "n.*207C>G",
          "hgvs_p": null,
          "transcript": "ENST00000559652.5",
          "protein_id": "ENSP00000453104.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 797,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000559652.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000259805",
          "gene_hgnc_id": null,
          "hgvs_c": "n.735-73125G>C",
          "hgvs_p": null,
          "transcript": "ENST00000566841.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 754,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000566841.1"
        },
        {
          "aa_ref": null,
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        {
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          "verdict": "Uncertain_significance",
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        {
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            "PP3"
          ],
          "verdict": "Uncertain_significance",
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        {
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            "PP3"
          ],
          "verdict": "Uncertain_significance",
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          "effects": [
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.