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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 15-87933149-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=87933149&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "15",
      "pos": 87933149,
      "ref": "A",
      "alt": "G",
      "effect": "synonymous_variant",
      "transcript": "ENST00000629765.3",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "NM_001012338.3",
          "protein_id": "NP_001012338.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 839,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2520,
          "cdna_start": 2066,
          "cdna_end": null,
          "cdna_length": 20018,
          "mane_select": "ENST00000629765.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "ENST00000629765.3",
          "protein_id": "ENSP00000485864.1",
          "transcript_support_level": 1,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 839,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2520,
          "cdna_start": 2066,
          "cdna_end": null,
          "cdna_length": 20018,
          "mane_select": "NM_001012338.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1728T>C",
          "hgvs_p": "p.Asp576Asp",
          "transcript": "ENST00000557856.5",
          "protein_id": "ENSP00000453959.1",
          "transcript_support_level": 1,
          "aa_start": 576,
          "aa_end": null,
          "aa_length": 817,
          "cds_start": 1728,
          "cds_end": null,
          "cds_length": 2454,
          "cdna_start": 1752,
          "cdna_end": null,
          "cdna_length": 2622,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1728T>C",
          "hgvs_p": "p.Asp576Asp",
          "transcript": "ENST00000558676.5",
          "protein_id": "ENSP00000453511.1",
          "transcript_support_level": 1,
          "aa_start": 576,
          "aa_end": null,
          "aa_length": 705,
          "cds_start": 1728,
          "cds_end": null,
          "cds_length": 2118,
          "cdna_start": 1754,
          "cdna_end": null,
          "cdna_length": 4670,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "n.149T>C",
          "hgvs_p": null,
          "transcript": "ENST00000559680.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 441,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "ENST00000626019.2",
          "protein_id": "ENSP00000486784.1",
          "transcript_support_level": 5,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 864,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2595,
          "cdna_start": 1752,
          "cdna_end": null,
          "cdna_length": 2741,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "NM_001375810.1",
          "protein_id": "NP_001362739.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 839,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2520,
          "cdna_start": 1778,
          "cdna_end": null,
          "cdna_length": 19730,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "ENST00000695462.1",
          "protein_id": "ENSP00000511942.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 839,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2520,
          "cdna_start": 2001,
          "cdna_end": null,
          "cdna_length": 2901,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1728T>C",
          "hgvs_p": "p.Asp576Asp",
          "transcript": "ENST00000357724.6",
          "protein_id": "ENSP00000350356.2",
          "transcript_support_level": 5,
          "aa_start": 576,
          "aa_end": null,
          "aa_length": 831,
          "cds_start": 1728,
          "cds_end": null,
          "cds_length": 2496,
          "cdna_start": 2034,
          "cdna_end": null,
          "cdna_length": 2980,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "NM_001375811.1",
          "protein_id": "NP_001362740.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2478,
          "cdna_start": 1778,
          "cdna_end": null,
          "cdna_length": 19688,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "NM_002530.4",
          "protein_id": "NP_002521.2",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2478,
          "cdna_start": 2066,
          "cdna_end": null,
          "cdna_length": 19976,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "ENST00000394480.6",
          "protein_id": "ENSP00000377990.1",
          "transcript_support_level": 5,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2478,
          "cdna_start": 2074,
          "cdna_end": null,
          "cdna_length": 19984,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1728T>C",
          "hgvs_p": "p.Asp576Asp",
          "transcript": "NM_001243101.2",
          "protein_id": "NP_001230030.1",
          "transcript_support_level": null,
          "aa_start": 576,
          "aa_end": null,
          "aa_length": 817,
          "cds_start": 1728,
          "cds_end": null,
          "cds_length": 2454,
          "cdna_start": 2042,
          "cdna_end": null,
          "cdna_length": 19952,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1728T>C",
          "hgvs_p": "p.Asp576Asp",
          "transcript": "NM_001375812.1",
          "protein_id": "NP_001362741.1",
          "transcript_support_level": null,
          "aa_start": 576,
          "aa_end": null,
          "aa_length": 817,
          "cds_start": 1728,
          "cds_end": null,
          "cds_length": 2454,
          "cdna_start": 1754,
          "cdna_end": null,
          "cdna_length": 19664,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1458T>C",
          "hgvs_p": "p.Asp486Asp",
          "transcript": "NM_001320135.2",
          "protein_id": "NP_001307064.1",
          "transcript_support_level": null,
          "aa_start": 486,
          "aa_end": null,
          "aa_length": 617,
          "cds_start": 1458,
          "cds_end": null,
          "cds_length": 1854,
          "cdna_start": 1659,
          "cdna_end": null,
          "cdna_length": 2339,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1458T>C",
          "hgvs_p": "p.Asp486Asp",
          "transcript": "ENST00000542733.6",
          "protein_id": "ENSP00000437773.2",
          "transcript_support_level": 2,
          "aa_start": 486,
          "aa_end": null,
          "aa_length": 617,
          "cds_start": 1458,
          "cds_end": null,
          "cds_length": 1854,
          "cdna_start": 1618,
          "cdna_end": null,
          "cdna_length": 2287,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "XM_017022254.3",
          "protein_id": "XP_016877743.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 850,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2553,
          "cdna_start": 1778,
          "cdna_end": null,
          "cdna_length": 19763,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "XM_017022240.2",
          "protein_id": "XP_016877729.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 825,
          "cds_start": 1752,
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          "cds_length": 2478,
          "cdna_start": 2181,
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          "cdna_length": 20091,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1566T>C",
          "hgvs_p": "p.Asp522Asp",
          "transcript": "XM_017022241.2",
          "protein_id": "XP_016877730.1",
          "transcript_support_level": null,
          "aa_start": 522,
          "aa_end": null,
          "aa_length": 763,
          "cds_start": 1566,
          "cds_end": null,
          "cds_length": 2292,
          "cdna_start": 1718,
          "cdna_end": null,
          "cdna_length": 19628,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NTRK3",
          "gene_hgnc_id": 8033,
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp",
          "transcript": "XM_017022242.3",
          "protein_id": "XP_016877731.1",
          "transcript_support_level": null,
          "aa_start": 584,
          "aa_end": null,
          "aa_length": 750,
          "cds_start": 1752,
          "cds_end": null,
          "cds_length": 2253,
          "cdna_start": 1778,
          "cdna_end": null,
          "cdna_length": 10796,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "D",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
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        {
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          "consequences": [
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          "gene_symbol": "NTRK3",
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          "transcript": "XR_001751292.3",
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        },
        {
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          "consequences": [
            "upstream_gene_variant"
          ],
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          "gene_symbol": "NTRK3",
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          "hgvs_c": "c.-61T>C",
          "hgvs_p": null,
          "transcript": "ENST00000558576.5",
          "protein_id": "ENSP00000473315.1",
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        }
      ],
      "gene_symbol": "NTRK3",
      "gene_hgnc_id": 8033,
      "dbsnp": "rs748800325",
      "frequency_reference_population": 0.0000013681014,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 2,
      "gnomad_exomes_af": 0.0000013681,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 2,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.5799999833106995,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.58,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.402,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -5,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM2,BP4_Strong,BP6_Moderate,BP7",
      "acmg_by_gene": [
        {
          "score": -5,
          "benign_score": 7,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP6_Moderate",
            "BP7"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000629765.3",
          "gene_symbol": "NTRK3",
          "hgnc_id": 8033,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.1752T>C",
          "hgvs_p": "p.Asp584Asp"
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}