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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 15-90815265-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=90815265&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "15",
      "pos": 90815265,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_000057.4",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "NM_000057.4",
          "protein_id": "NP_000048.1",
          "transcript_support_level": null,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000355112.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000057.4"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "ENST00000355112.8",
          "protein_id": "ENSP00000347232.3",
          "transcript_support_level": 1,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000057.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000355112.8"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.3847T>C",
          "hgvs_p": "p.Tyr1283His",
          "transcript": "ENST00000560509.5",
          "protein_id": "ENSP00000454158.1",
          "transcript_support_level": 1,
          "aa_start": 1283,
          "aa_end": null,
          "aa_length": 1286,
          "cds_start": 3847,
          "cds_end": null,
          "cds_length": 3861,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000560509.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "n.*3164T>C",
          "hgvs_p": null,
          "transcript": "ENST00000559724.5",
          "protein_id": "ENSP00000453359.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000559724.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "n.*3164T>C",
          "hgvs_p": null,
          "transcript": "ENST00000559724.5",
          "protein_id": "ENSP00000453359.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000559724.5"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4333T>C",
          "hgvs_p": "p.Tyr1445His",
          "transcript": "ENST00000936452.1",
          "protein_id": "ENSP00000606511.1",
          "transcript_support_level": null,
          "aa_start": 1445,
          "aa_end": null,
          "aa_length": 1448,
          "cds_start": 4333,
          "cds_end": null,
          "cds_length": 4347,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936452.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4294T>C",
          "hgvs_p": "p.Tyr1432His",
          "transcript": "ENST00000936450.1",
          "protein_id": "ENSP00000606509.1",
          "transcript_support_level": null,
          "aa_start": 1432,
          "aa_end": null,
          "aa_length": 1435,
          "cds_start": 4294,
          "cds_end": null,
          "cds_length": 4308,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936450.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "NM_001287246.2",
          "protein_id": "NP_001274175.1",
          "transcript_support_level": null,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001287246.2"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "ENST00000680772.1",
          "protein_id": "ENSP00000506117.1",
          "transcript_support_level": null,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000680772.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "ENST00000936448.1",
          "protein_id": "ENSP00000606507.1",
          "transcript_support_level": null,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936448.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "ENST00000936451.1",
          "protein_id": "ENSP00000606510.1",
          "transcript_support_level": null,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936451.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His",
          "transcript": "ENST00000936455.1",
          "protein_id": "ENSP00000606514.1",
          "transcript_support_level": null,
          "aa_start": 1414,
          "aa_end": null,
          "aa_length": 1417,
          "cds_start": 4240,
          "cds_end": null,
          "cds_length": 4254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936455.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4237T>C",
          "hgvs_p": "p.Tyr1413His",
          "transcript": "ENST00000936446.1",
          "protein_id": "ENSP00000606505.1",
          "transcript_support_level": null,
          "aa_start": 1413,
          "aa_end": null,
          "aa_length": 1416,
          "cds_start": 4237,
          "cds_end": null,
          "cds_length": 4251,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936446.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4141T>C",
          "hgvs_p": "p.Tyr1381His",
          "transcript": "ENST00000936454.1",
          "protein_id": "ENSP00000606513.1",
          "transcript_support_level": null,
          "aa_start": 1381,
          "aa_end": null,
          "aa_length": 1384,
          "cds_start": 4141,
          "cds_end": null,
          "cds_length": 4155,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936454.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.4126T>C",
          "hgvs_p": "p.Tyr1376His",
          "transcript": "ENST00000891949.1",
          "protein_id": "ENSP00000562008.1",
          "transcript_support_level": null,
          "aa_start": 1376,
          "aa_end": null,
          "aa_length": 1379,
          "cds_start": 4126,
          "cds_end": null,
          "cds_length": 4140,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891949.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.3847T>C",
          "hgvs_p": "p.Tyr1283His",
          "transcript": "NM_001287247.2",
          "protein_id": "NP_001274176.1",
          "transcript_support_level": null,
          "aa_start": 1283,
          "aa_end": null,
          "aa_length": 1286,
          "cds_start": 3847,
          "cds_end": null,
          "cds_length": 3861,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001287247.2"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.3652T>C",
          "hgvs_p": "p.Tyr1218His",
          "transcript": "ENST00000936445.1",
          "protein_id": "ENSP00000606504.1",
          "transcript_support_level": null,
          "aa_start": 1218,
          "aa_end": null,
          "aa_length": 1221,
          "cds_start": 3652,
          "cds_end": null,
          "cds_length": 3666,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936445.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.3583T>C",
          "hgvs_p": "p.Tyr1195His",
          "transcript": "ENST00000936447.1",
          "protein_id": "ENSP00000606506.1",
          "transcript_support_level": null,
          "aa_start": 1195,
          "aa_end": null,
          "aa_length": 1198,
          "cds_start": 3583,
          "cds_end": null,
          "cds_length": 3597,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000936447.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.3115T>C",
          "hgvs_p": "p.Tyr1039His",
          "transcript": "NM_001287248.2",
          "protein_id": "NP_001274177.1",
          "transcript_support_level": null,
          "aa_start": 1039,
          "aa_end": null,
          "aa_length": 1042,
          "cds_start": 3115,
          "cds_end": null,
          "cds_length": 3129,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001287248.2"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "H",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BLM",
          "gene_hgnc_id": 1058,
          "hgvs_c": "c.2665T>C",
          "hgvs_p": "p.Tyr889His",
          "transcript": "ENST00000936453.1",
          "protein_id": "ENSP00000606512.1",
          "transcript_support_level": null,
          "aa_start": 889,
          "aa_end": null,
          "aa_length": 892,
          "cds_start": 2665,
          "cds_end": null,
          "cds_length": 2679,
          "cdna_start": null,
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        {
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        {
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          "biotype": "pseudogene",
          "feature": "ENST00000656405.1"
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      ],
      "gene_symbol": "BLM",
      "gene_hgnc_id": 1058,
      "dbsnp": "rs753800694",
      "frequency_reference_population": 0.000038412927,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 62,
      "gnomad_exomes_af": 0.0000396763,
      "gnomad_genomes_af": 0.0000262795,
      "gnomad_exomes_ac": 58,
      "gnomad_genomes_ac": 4,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.6004201769828796,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.223,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.3746,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.2,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 5.022,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 0,
          "pathogenic_score": 0,
          "criteria": [],
          "verdict": "Uncertain_significance",
          "transcript": "NM_000057.4",
          "gene_symbol": "BLM",
          "hgnc_id": 1058,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR,AD",
          "hgvs_c": "c.4240T>C",
          "hgvs_p": "p.Tyr1414His"
        },
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000656405.1",
          "gene_symbol": "ENSG00000287061",
          "hgnc_id": null,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.280A>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Bloom syndrome,Hereditary cancer-predisposing syndrome,not provided",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:3",
      "phenotype_combined": "Bloom syndrome|Hereditary cancer-predisposing syndrome|not provided",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}