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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 15-90907211-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=90907211&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "15",
"pos": 90907211,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000559717.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "NM_006122.4",
"protein_id": "NP_006113.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1150,
"cds_start": -4,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6394,
"mane_select": "ENST00000559717.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "ENST00000559717.6",
"protein_id": "ENSP00000452948.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1150,
"cds_start": -4,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6394,
"mane_select": "NM_006122.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "ENST00000360468.7",
"protein_id": "ENSP00000353655.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1150,
"cds_start": -4,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6268,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.1010-98G>C",
"hgvs_p": null,
"transcript": "ENST00000558161.5",
"protein_id": "ENSP00000452631.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4918,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.1372-98G>C",
"hgvs_p": null,
"transcript": "ENST00000560192.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2469,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.1010-98G>C",
"hgvs_p": null,
"transcript": "ENST00000560451.6",
"protein_id": "ENSP00000453999.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6518,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.362G>C",
"hgvs_p": null,
"transcript": "ENST00000558640.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 532,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "NM_001320977.2",
"protein_id": "NP_001307906.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1175,
"cds_start": -4,
"cds_end": null,
"cds_length": 3528,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6685,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.65-98G>C",
"hgvs_p": null,
"transcript": "ENST00000557865.5",
"protein_id": "ENSP00000453140.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 793,
"cds_start": -4,
"cds_end": null,
"cds_length": 2382,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2671,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.220-98G>C",
"hgvs_p": null,
"transcript": "ENST00000561046.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 430,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.1339-98G>C",
"hgvs_p": null,
"transcript": "NR_135502.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 6567,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.1339-98G>C",
"hgvs_p": null,
"transcript": "NR_135503.2",
"protein_id": null,
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"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "n.1028-98G>C",
"hgvs_p": null,
"transcript": "NR_135504.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_005254910.4",
"protein_id": "XP_005254967.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_017022184.2",
"protein_id": "XP_016877673.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_024449920.2",
"protein_id": "XP_024305688.1",
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},
{
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],
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"intron_rank": 7,
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"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_024449921.2",
"protein_id": "XP_024305689.1",
"transcript_support_level": null,
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 26,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_047432507.1",
"protein_id": "XP_047288463.1",
"transcript_support_level": null,
"aa_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_017022185.2",
"protein_id": "XP_016877674.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
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"transcript": "XM_024449922.2",
"protein_id": "XP_024305690.1",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
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"transcript": "XM_024449923.2",
"protein_id": "XP_024305691.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_024449924.2",
"protein_id": "XP_024305692.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 6580,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "MAN2A2",
"gene_hgnc_id": 6825,
"hgvs_c": "c.1010-98G>C",
"hgvs_p": null,
"transcript": "XM_047432508.1",
"protein_id": "XP_047288464.1",
"transcript_support_level": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
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}
],
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}