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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 15-99712504-CCAGCAGCAGCAG-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=15&pos=99712504&ref=CCAGCAGCAGCAG&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "15",
      "pos": 99712504,
      "ref": "CCAGCAGCAGCAG",
      "alt": "C",
      "effect": "disruptive_inframe_deletion",
      "transcript": "ENST00000557942.6",
      "consequences": [
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "NM_001319206.4",
          "protein_id": "NP_001306135.1",
          "transcript_support_level": null,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 1274,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": 1619,
          "cdna_end": null,
          "cdna_length": 5580,
          "mane_select": "ENST00000557942.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "ENST00000557942.6",
          "protein_id": "ENSP00000453095.1",
          "transcript_support_level": 5,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 1274,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": 1619,
          "cdna_end": null,
          "cdna_length": 5580,
          "mane_select": "NM_001319206.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1256_1267delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln419_Gln422del",
          "transcript": "ENST00000354410.9",
          "protein_id": "ENSP00000346389.5",
          "transcript_support_level": 1,
          "aa_start": 419,
          "aa_end": null,
          "aa_length": 499,
          "cds_start": 1256,
          "cds_end": null,
          "cds_length": 1500,
          "cdna_start": 1885,
          "cdna_end": null,
          "cdna_length": 5824,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1388_1399delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln463_Gln466del",
          "transcript": "NM_001400028.1",
          "protein_id": "NP_001386957.1",
          "transcript_support_level": null,
          "aa_start": 463,
          "aa_end": null,
          "aa_length": 543,
          "cds_start": 1388,
          "cds_end": null,
          "cds_length": 1632,
          "cdna_start": 1733,
          "cdna_end": null,
          "cdna_length": 5694,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1292_1303delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln431_Gln434del",
          "transcript": "NM_001365201.3",
          "protein_id": "NP_001352130.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 511,
          "cds_start": 1292,
          "cds_end": null,
          "cds_length": 1536,
          "cdna_start": 1637,
          "cdna_end": null,
          "cdna_length": 5598,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1292_1303delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln431_Gln434del",
          "transcript": "NM_001365202.3",
          "protein_id": "NP_001352131.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 511,
          "cds_start": 1292,
          "cds_end": null,
          "cds_length": 1536,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 5516,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1292_1303delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln431_Gln434del",
          "transcript": "ENST00000338042.11",
          "protein_id": "ENSP00000337202.8",
          "transcript_support_level": 2,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 511,
          "cds_start": 1292,
          "cds_end": null,
          "cds_length": 1536,
          "cdna_start": 1637,
          "cdna_end": null,
          "cdna_length": 5598,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1292_1303delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln431_Gln434del",
          "transcript": "ENST00000690055.1",
          "protein_id": "ENSP00000509700.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 511,
          "cds_start": 1292,
          "cds_end": null,
          "cds_length": 1536,
          "cdna_start": 1526,
          "cdna_end": null,
          "cdna_length": 3011,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1292_1303delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln431_Gln434del",
          "transcript": "ENST00000705985.1",
          "protein_id": "ENSP00000516195.1",
          "transcript_support_level": null,
          "aa_start": 431,
          "aa_end": null,
          "aa_length": 511,
          "cds_start": 1292,
          "cds_end": null,
          "cds_length": 1536,
          "cdna_start": 1637,
          "cdna_end": null,
          "cdna_length": 5598,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1280_1291delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln427_Gln430del",
          "transcript": "NM_001365203.3",
          "protein_id": "NP_001352132.1",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 507,
          "cds_start": 1280,
          "cds_end": null,
          "cds_length": 1524,
          "cdna_start": 1625,
          "cdna_end": null,
          "cdna_length": 5586,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1280_1291delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln427_Gln430del",
          "transcript": "NM_001365204.3",
          "protein_id": "NP_001352133.1",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 507,
          "cds_start": 1280,
          "cds_end": null,
          "cds_length": 1524,
          "cdna_start": 1543,
          "cdna_end": null,
          "cdna_length": 5504,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1280_1291delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln427_Gln430del",
          "transcript": "NM_001400029.1",
          "protein_id": "NP_001386958.1",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 507,
          "cds_start": 1280,
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          "cds_length": 1524,
          "cdna_start": 1621,
          "cdna_end": null,
          "cdna_length": 5582,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1280_1291delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln427_Gln430del",
          "transcript": "NM_001400030.1",
          "protein_id": "NP_001386959.1",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 507,
          "cds_start": 1280,
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          "cds_length": 1524,
          "cdna_start": 1578,
          "cdna_end": null,
          "cdna_length": 5539,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
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          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1280_1291delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln427_Gln430del",
          "transcript": "ENST00000686611.1",
          "protein_id": "ENSP00000509137.1",
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          "cds_start": 1280,
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          "feature": null
        },
        {
          "aa_ref": "QQQQP",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "NM_001352616.4",
          "protein_id": "NP_001339545.1",
          "transcript_support_level": null,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 1274,
          "cds_end": null,
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          "cdna_start": 1533,
          "cdna_end": null,
          "cdna_length": 5494,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "NM_001365205.3",
          "protein_id": "NP_001352134.1",
          "transcript_support_level": null,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 505,
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          "cdna_start": 1537,
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          "cdna_length": 5498,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "NM_001400031.1",
          "protein_id": "NP_001386960.1",
          "transcript_support_level": null,
          "aa_start": 425,
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          "cdna_start": 1658,
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          "cdna_length": 5619,
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        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "NM_001400032.1",
          "protein_id": "NP_001386961.1",
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          "mane_select": null,
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        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
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          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
          "gene_hgnc_id": 6993,
          "hgvs_c": "c.1274_1285delAGCAGCAGCAGC",
          "hgvs_p": "p.Gln425_Gln428del",
          "transcript": "NM_001400033.1",
          "protein_id": "NP_001386962.1",
          "transcript_support_level": null,
          "aa_start": 425,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 1274,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": 1642,
          "cdna_end": null,
          "cdna_length": 5603,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "QQQQP",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MEF2A",
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      "dbsnp": "rs3138597",
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      "gnomad_genomes_homalt": 0,
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      "computational_score_selected": null,
      "computational_prediction_selected": null,
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      "alphamissense_score": null,
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      "bayesdelnoaf_score": null,
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      "phylop100way_score": 6.73,
      "phylop100way_prediction": "Uncertain_significance",
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      "dbscsnv_ada_score": null,
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      "acmg_score": -5,
      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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          "benign_score": 5,
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            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000557942.6",
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          "hgvs_p": "p.Gln425_Gln428del"
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}