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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-10755731-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=10755731&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 1,
          "criteria": [
            "BP4"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "NUBP1",
          "hgnc_id": 8041,
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "inheritance_mode": "AR",
          "pathogenic_score": 0,
          "score": -1,
          "transcript": "NM_002484.4",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4",
      "acmg_score": -1,
      "allele_count_reference_population": 28,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.8493,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.27,
      "chr": "16",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.33754950761795044,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 320,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1231,
          "cdna_start": 360,
          "cds_end": null,
          "cds_length": 963,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_002484.4",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000283027.10",
          "protein_coding": true,
          "protein_id": "NP_002475.2",
          "strand": true,
          "transcript": "NM_002484.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 320,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1231,
          "cdna_start": 360,
          "cds_end": null,
          "cds_length": 963,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000283027.10",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002484.4",
          "protein_coding": true,
          "protein_id": "ENSP00000283027.5",
          "strand": true,
          "transcript": "ENST00000283027.10",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 309,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1185,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 930,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000433392.6",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.328-959G>A",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000409654.2",
          "strand": true,
          "transcript": "ENST00000433392.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1137,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000571790.5",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "n.361G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000571790.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 969,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 7,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000574137.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "n.348-2142G>A",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000574137.1",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 319,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1218,
          "cdna_start": 350,
          "cds_end": null,
          "cds_length": 960,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000851531.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000521590.1",
          "strand": true,
          "transcript": "ENST00000851531.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 318,
          "aa_ref": "S",
          "aa_start": 111,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1241,
          "cdna_start": 369,
          "cds_end": null,
          "cds_length": 957,
          "cds_start": 332,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000851530.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.332G>A",
          "hgvs_p": "p.Ser111Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000521589.1",
          "strand": true,
          "transcript": "ENST00000851530.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 317,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1228,
          "cdna_start": 368,
          "cds_end": null,
          "cds_length": 954,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000924648.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000594707.1",
          "strand": true,
          "transcript": "ENST00000924648.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 299,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1157,
          "cdna_start": 350,
          "cds_end": null,
          "cds_length": 900,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000851532.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000521591.1",
          "strand": true,
          "transcript": "ENST00000851532.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 295,
          "aa_ref": "S",
          "aa_start": 88,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1152,
          "cdna_start": 283,
          "cds_end": null,
          "cds_length": 888,
          "cds_start": 263,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000960379.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.263G>A",
          "hgvs_p": "p.Ser88Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630438.1",
          "strand": true,
          "transcript": "ENST00000960379.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 292,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1147,
          "cdna_start": 360,
          "cds_end": null,
          "cds_length": 879,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001323595.2",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310524.1",
          "strand": true,
          "transcript": "NM_001323595.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 285,
          "aa_ref": "S",
          "aa_start": 78,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1141,
          "cdna_start": 270,
          "cds_end": null,
          "cds_length": 858,
          "cds_start": 233,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000924647.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.233G>A",
          "hgvs_p": "p.Ser78Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000594706.1",
          "strand": true,
          "transcript": "ENST00000924647.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 269,
          "aa_ref": "S",
          "aa_start": 90,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1078,
          "cdna_start": 291,
          "cds_end": null,
          "cds_length": 810,
          "cds_start": 269,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001323594.2",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.269G>A",
          "hgvs_p": "p.Ser90Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310523.1",
          "strand": true,
          "transcript": "NM_001323594.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 259,
          "aa_ref": "S",
          "aa_start": 113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1128,
          "cdna_start": 360,
          "cds_end": null,
          "cds_length": 780,
          "cds_start": 338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001323596.2",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.338G>A",
          "hgvs_p": "p.Ser113Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310525.1",
          "strand": true,
          "transcript": "NM_001323596.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 244,
          "aa_ref": "S",
          "aa_start": 64,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1201,
          "cdna_start": 333,
          "cds_end": null,
          "cds_length": 735,
          "cds_start": 191,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001323597.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.191G>A",
          "hgvs_p": "p.Ser64Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310526.1",
          "strand": true,
          "transcript": "NM_001323597.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 167,
          "aa_ref": "S",
          "aa_start": 90,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 582,
          "cdna_start": 347,
          "cds_end": null,
          "cds_length": 504,
          "cds_start": 269,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000574334.5",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.269G>A",
          "hgvs_p": "p.Ser90Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000461746.1",
          "strand": true,
          "transcript": "ENST00000574334.5",
          "transcript_support_level": 3
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 309,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1198,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 930,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001278506.2",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.328-959G>A",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001265435.1",
          "strand": true,
          "transcript": "NM_001278506.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 307,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1208,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 924,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000924645.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.322-959G>A",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000594704.1",
          "strand": true,
          "transcript": "ENST00000924645.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 306,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1179,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 921,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 10,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000924650.1",
          "gene_hgnc_id": 8041,
          "gene_symbol": "NUBP1",
          "hgvs_c": "c.328-959G>A",
          "hgvs_p": null,
          "intron_rank": 4,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000594709.1",
          "strand": true,
          "transcript": "ENST00000924650.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.