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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-1200768-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=1200768&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 1200768,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000569107.6",
      "consequences": [
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "NM_021098.3",
          "protein_id": "NP_066921.2",
          "transcript_support_level": null,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2353,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7062,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 8219,
          "mane_select": "ENST00000348261.11",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000348261.11",
          "protein_id": "ENSP00000334198.7",
          "transcript_support_level": 1,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2353,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7062,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 8219,
          "mane_select": "NM_021098.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000569107.6",
          "protein_id": "ENSP00000454990.2",
          "transcript_support_level": 1,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2358,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7077,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 7550,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711493.1",
          "protein_id": "ENSP00000518778.1",
          "transcript_support_level": null,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2348,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7047,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 8198,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000565831.7",
          "protein_id": "ENSP00000455840.1",
          "transcript_support_level": 1,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2347,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7044,
          "cdna_start": 1553,
          "cdna_end": null,
          "cdna_length": 8196,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711450.1",
          "protein_id": "ENSP00000518762.1",
          "transcript_support_level": null,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2347,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7044,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 8201,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000564231.6",
          "protein_id": "ENSP00000457555.2",
          "transcript_support_level": 1,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2342,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7029,
          "cdna_start": 1518,
          "cdna_end": null,
          "cdna_length": 10507,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1133A>G",
          "hgvs_p": "p.His378Arg",
          "transcript": "ENST00000638323.1",
          "protein_id": "ENSP00000492267.1",
          "transcript_support_level": 5,
          "aa_start": 378,
          "aa_end": null,
          "aa_length": 2340,
          "cds_start": 1133,
          "cds_end": null,
          "cds_length": 7023,
          "cdna_start": 1381,
          "cdna_end": null,
          "cdna_length": 8048,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000562079.6",
          "protein_id": "ENSP00000454581.2",
          "transcript_support_level": 1,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2336,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 7011,
          "cdna_start": 1549,
          "cdna_end": null,
          "cdna_length": 8162,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1133A>G",
          "hgvs_p": "p.His378Arg",
          "transcript": "ENST00000711438.1",
          "protein_id": "ENSP00000518754.1",
          "transcript_support_level": null,
          "aa_start": 378,
          "aa_end": null,
          "aa_length": 2334,
          "cds_start": 1133,
          "cds_end": null,
          "cds_length": 7005,
          "cdna_start": 1294,
          "cdna_end": null,
          "cdna_length": 10289,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711482.1",
          "protein_id": "ENSP00000518771.1",
          "transcript_support_level": null,
          "aa_start": 391,
          "aa_end": null,
          "aa_length": 2137,
          "cds_start": 1172,
          "cds_end": null,
          "cds_length": 6414,
          "cdna_start": 1555,
          "cdna_end": null,
          "cdna_length": 8108,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711485.1",
          "protein_id": "ENSP00000518774.1",
          "transcript_support_level": null,
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          "cds_start": 1172,
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          "cdna_start": 1555,
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          "mane_select": null,
          "mane_plus": null,
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        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
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          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711455.1",
          "protein_id": "ENSP00000518768.1",
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          "aa_start": 391,
          "aa_end": null,
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          "cds_start": 1172,
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          "cdna_start": 1544,
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          "feature": null
        },
        {
          "aa_ref": "H",
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          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711483.1",
          "protein_id": "ENSP00000518772.1",
          "transcript_support_level": null,
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          "cds_start": 1172,
          "cds_end": null,
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          "cdna_start": 1555,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "H",
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          "protein_coding": true,
          "strand": true,
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          ],
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          "intron_rank": null,
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          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg",
          "transcript": "ENST00000711456.1",
          "protein_id": "ENSP00000518769.1",
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          "aa_length": 1974,
          "cds_start": 1172,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 37,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "n.1172A>G",
          "hgvs_p": null,
          "transcript": "ENST00000621827.2",
          "protein_id": "ENSP00000518766.1",
          "transcript_support_level": 6,
          "aa_start": null,
          "aa_end": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "n.1172A>G",
          "hgvs_p": null,
          "transcript": "ENST00000637236.3",
          "protein_id": "ENSP00000492650.2",
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "n.1172A>G",
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          "transcript": "ENST00000639478.1",
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "n.1172A>G",
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          "protein_id": "ENSP00000491488.1",
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          "cdna_length": 7375,
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          "feature": null
        },
        {
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          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CACNA1H",
          "gene_hgnc_id": 1395,
          "hgvs_c": "n.*619A>G",
          "hgvs_p": null,
          "transcript": "ENST00000711442.1",
          "protein_id": "ENSP00000518758.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7854,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
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        {
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          "protein_id": "ENSP00000518770.1",
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        },
        {
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          "consequences": [
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          ],
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          "exon_count": 3,
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          "gene_symbol": "LOC124903623",
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          "transcript": "XR_007064938.1",
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        }
      ],
      "gene_symbol": "CACNA1H",
      "gene_hgnc_id": 1395,
      "dbsnp": "rs770983743",
      "frequency_reference_population": 0.0000028514603,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 4,
      "gnomad_exomes_af": 0.00000285146,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 4,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.8632972240447998,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.725,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.873,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.29,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 9.059,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Moderate,BP6_Moderate",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 2,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate",
            "BP6_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000569107.6",
          "gene_symbol": "CACNA1H",
          "hgnc_id": 1395,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.1172A>G",
          "hgvs_p": "p.His391Arg"
        },
        {
          "score": 2,
          "benign_score": 2,
          "pathogenic_score": 4,
          "criteria": [
            "PM2",
            "PP3_Moderate",
            "BP6_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "XR_007064938.1",
          "gene_symbol": "LOC124903623",
          "hgnc_id": null,
          "effects": [
            "downstream_gene_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.*38T>C",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": " familial, type IV,Hyperaldosteronism,Idiopathic generalized epilepsy",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "Idiopathic generalized epilepsy;Hyperaldosteronism, familial, type IV",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}