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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-1520678-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=1520678&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PP3"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "IFT140",
          "hgnc_id": 29077,
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "inheritance_mode": "AD,AR",
          "pathogenic_score": 1,
          "score": 1,
          "transcript": "NM_014714.4",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PP3",
      "acmg_score": 1,
      "allele_count_reference_population": 57,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.6239,
      "alt": "G",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "bayesdelnoaf_score": -0.05,
      "chr": "16",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "Saldino-Mainzer syndrome",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.7554866075515747,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5232,
          "cdna_start": 3910,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "NM_014714.4",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000426508.7",
          "protein_coding": true,
          "protein_id": "NP_055529.2",
          "strand": false,
          "transcript": "NM_014714.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 5232,
          "cdna_start": 3910,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "ENST00000426508.7",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_014714.4",
          "protein_coding": true,
          "protein_id": "ENSP00000406012.2",
          "strand": false,
          "transcript": "ENST00000426508.7",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 656,
          "aa_ref": "I",
          "aa_start": 389,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2987,
          "cdna_start": 1665,
          "cds_end": null,
          "cds_length": 1971,
          "cds_start": 1166,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000361339.9",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.1166T>C",
          "hgvs_p": "p.Ile389Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000354895.5",
          "strand": false,
          "transcript": "ENST00000361339.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6212,
          "cdna_start": 4890,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "ENST00000889170.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559229.1",
          "strand": false,
          "transcript": "ENST00000889170.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5950,
          "cdna_start": 4633,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "ENST00000962400.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000632459.1",
          "strand": false,
          "transcript": "ENST00000962400.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5007,
          "cdna_start": 3686,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "ENST00000962401.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000632460.1",
          "strand": false,
          "transcript": "ENST00000962401.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6348,
          "cdna_start": 5026,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "ENST00000962402.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000632461.1",
          "strand": false,
          "transcript": "ENST00000962402.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1441,
          "aa_ref": "I",
          "aa_start": 1174,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4908,
          "cdna_start": 3590,
          "cds_end": null,
          "cds_length": 4326,
          "cds_start": 3521,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "ENST00000889168.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3521T>C",
          "hgvs_p": "p.Ile1174Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559227.1",
          "strand": false,
          "transcript": "ENST00000889168.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1424,
          "aa_ref": "I",
          "aa_start": 1157,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4892,
          "cdna_start": 3572,
          "cds_end": null,
          "cds_length": 4275,
          "cds_start": 3470,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "ENST00000889169.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3470T>C",
          "hgvs_p": "p.Ile1157Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559228.1",
          "strand": false,
          "transcript": "ENST00000889169.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1424,
          "aa_ref": "I",
          "aa_start": 1157,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5121,
          "cdna_start": 3799,
          "cds_end": null,
          "cds_length": 4275,
          "cds_start": 3470,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "ENST00000914239.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3470T>C",
          "hgvs_p": "p.Ile1157Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000584298.1",
          "strand": false,
          "transcript": "ENST00000914239.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5222,
          "cdna_start": 3900,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "XM_006720990.4",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_006721053.1",
          "strand": false,
          "transcript": "XM_006720990.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6238,
          "cdna_start": 4916,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "XM_006720991.4",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_006721054.1",
          "strand": false,
          "transcript": "XM_006720991.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4975,
          "cdna_start": 3653,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "XM_047434965.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047290921.1",
          "strand": false,
          "transcript": "XM_047434965.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5788,
          "cdna_start": 4466,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "XM_047434966.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047290922.1",
          "strand": false,
          "transcript": "XM_047434966.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6364,
          "cdna_start": 5042,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "XM_047434967.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047290923.1",
          "strand": false,
          "transcript": "XM_047434967.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6375,
          "cdna_start": 5053,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 31,
          "exon_rank": 27,
          "exon_rank_end": null,
          "feature": "XM_047434968.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047290924.1",
          "strand": false,
          "transcript": "XM_047434968.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1462,
          "aa_ref": "I",
          "aa_start": 1195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5691,
          "cdna_start": 4369,
          "cds_end": null,
          "cds_length": 4389,
          "cds_start": 3584,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 30,
          "exon_rank": 26,
          "exon_rank_end": null,
          "feature": "XM_047434969.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3584T>C",
          "hgvs_p": "p.Ile1195Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047290925.1",
          "strand": false,
          "transcript": "XM_047434969.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1380,
          "aa_ref": "I",
          "aa_start": 1113,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4986,
          "cdna_start": 3664,
          "cds_end": null,
          "cds_length": 4143,
          "cds_start": 3338,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 29,
          "exon_rank": 25,
          "exon_rank_end": null,
          "feature": "XM_047434970.1",
          "gene_hgnc_id": 29077,
          "gene_symbol": "IFT140",
          "hgvs_c": "c.3338T>C",
          "hgvs_p": "p.Ile1113Thr",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047290926.1",
          "strand": false,
          "transcript": "XM_047434970.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "T",
          "aa_end": null,
          "aa_length": 1137,
          "aa_ref": "I",
          "aa_start": 870,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3988,
          "cdna_start": 2666,
          "cds_end": null,
          "cds_length": 3414,
          "cds_start": 2609,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 23,
          "exon_rank": 19,
          "exon_rank_end": null,
          "feature": "XM_011522767.2",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.