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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 16-2088292-CCGGCTCCGCCACATCAAG-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=2088292&ref=CCGGCTCCGCCACATCAAG&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "16",
      "pos": 2088292,
      "ref": "CCGGCTCCGCCACATCAAG",
      "alt": "C",
      "effect": "disruptive_inframe_deletion",
      "transcript": "NM_000548.5",
      "consequences": [
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5238_5255delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1746_Arg1751del",
          "transcript": "NM_000548.5",
          "protein_id": "NP_000539.2",
          "transcript_support_level": null,
          "aa_start": 1746,
          "aa_end": null,
          "aa_length": 1807,
          "cds_start": 5238,
          "cds_end": null,
          "cds_length": 5424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000219476.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000548.5"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5238_5255delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1746_Arg1751del",
          "transcript": "ENST00000219476.9",
          "protein_id": "ENSP00000219476.3",
          "transcript_support_level": 5,
          "aa_start": 1746,
          "aa_end": null,
          "aa_length": 1807,
          "cds_start": 5238,
          "cds_end": null,
          "cds_length": 5424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000548.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000219476.9"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5169_5186delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1723_Arg1728del",
          "transcript": "ENST00000350773.9",
          "protein_id": "ENSP00000344383.4",
          "transcript_support_level": 1,
          "aa_start": 1723,
          "aa_end": null,
          "aa_length": 1784,
          "cds_start": 5169,
          "cds_end": null,
          "cds_length": 5355,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000350773.9"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5037_5054delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1679_Arg1684del",
          "transcript": "ENST00000401874.7",
          "protein_id": "ENSP00000384468.2",
          "transcript_support_level": 1,
          "aa_start": 1679,
          "aa_end": null,
          "aa_length": 1740,
          "cds_start": 5037,
          "cds_end": null,
          "cds_length": 5223,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000401874.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "n.*4405_*4422delCATCAAGCGGCTCCGCCA",
          "hgvs_p": null,
          "transcript": "ENST00000439117.6",
          "protein_id": "ENSP00000406980.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000439117.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "n.*4405_*4422delCATCAAGCGGCTCCGCCA",
          "hgvs_p": null,
          "transcript": "ENST00000439117.6",
          "protein_id": "ENSP00000406980.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000439117.6"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5328_5345delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1776_Arg1781del",
          "transcript": "ENST00000645186.2",
          "protein_id": "ENSP00000495110.2",
          "transcript_support_level": null,
          "aa_start": 1776,
          "aa_end": null,
          "aa_length": 1837,
          "cds_start": 5328,
          "cds_end": null,
          "cds_length": 5514,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000645186.2"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5235_5252delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1745_Arg1750del",
          "transcript": "NM_001406663.1",
          "protein_id": "NP_001393592.1",
          "transcript_support_level": null,
          "aa_start": 1745,
          "aa_end": null,
          "aa_length": 1806,
          "cds_start": 5235,
          "cds_end": null,
          "cds_length": 5421,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406663.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5235_5252delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1745_Arg1750del",
          "transcript": "ENST00000642365.2",
          "protein_id": "ENSP00000495459.2",
          "transcript_support_level": null,
          "aa_start": 1745,
          "aa_end": null,
          "aa_length": 1806,
          "cds_start": 5235,
          "cds_end": null,
          "cds_length": 5421,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000642365.2"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 42,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5232_5249delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1744_Arg1749del",
          "transcript": "ENST00000646388.1",
          "protein_id": "ENSP00000495921.1",
          "transcript_support_level": null,
          "aa_start": 1744,
          "aa_end": null,
          "aa_length": 1805,
          "cds_start": 5232,
          "cds_end": null,
          "cds_length": 5418,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000646388.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5214_5231delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1738_Arg1743del",
          "transcript": "ENST00000941763.1",
          "protein_id": "ENSP00000611822.1",
          "transcript_support_level": null,
          "aa_start": 1738,
          "aa_end": null,
          "aa_length": 1799,
          "cds_start": 5214,
          "cds_end": null,
          "cds_length": 5400,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000941763.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5205_5222delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1735_Arg1740del",
          "transcript": "ENST00000903285.1",
          "protein_id": "ENSP00000573344.1",
          "transcript_support_level": null,
          "aa_start": 1735,
          "aa_end": null,
          "aa_length": 1796,
          "cds_start": 5205,
          "cds_end": null,
          "cds_length": 5391,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000903285.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5169_5186delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1723_Arg1728del",
          "transcript": "NM_001114382.3",
          "protein_id": "NP_001107854.1",
          "transcript_support_level": null,
          "aa_start": 1723,
          "aa_end": null,
          "aa_length": 1784,
          "cds_start": 5169,
          "cds_end": null,
          "cds_length": 5355,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001114382.3"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5166_5183delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1722_Arg1727del",
          "transcript": "NM_001406664.1",
          "protein_id": "NP_001393593.1",
          "transcript_support_level": null,
          "aa_start": 1722,
          "aa_end": null,
          "aa_length": 1783,
          "cds_start": 5166,
          "cds_end": null,
          "cds_length": 5352,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406664.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5163_5180delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1721_Arg1726del",
          "transcript": "ENST00000643946.1",
          "protein_id": "ENSP00000495927.1",
          "transcript_support_level": null,
          "aa_start": 1721,
          "aa_end": null,
          "aa_length": 1782,
          "cds_start": 5163,
          "cds_end": null,
          "cds_length": 5349,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000643946.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5160_5177delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1720_Arg1725del",
          "transcript": "NM_001406665.1",
          "protein_id": "NP_001393594.1",
          "transcript_support_level": null,
          "aa_start": 1720,
          "aa_end": null,
          "aa_length": 1781,
          "cds_start": 5160,
          "cds_end": null,
          "cds_length": 5346,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001406665.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5160_5177delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1720_Arg1725del",
          "transcript": "ENST00000941766.1",
          "protein_id": "ENSP00000611825.1",
          "transcript_support_level": null,
          "aa_start": 1720,
          "aa_end": null,
          "aa_length": 1781,
          "cds_start": 5160,
          "cds_end": null,
          "cds_length": 5346,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000941766.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5157_5174delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1719_Arg1724del",
          "transcript": "ENST00000644399.1",
          "protein_id": "ENSP00000493990.1",
          "transcript_support_level": null,
          "aa_start": 1719,
          "aa_end": null,
          "aa_length": 1780,
          "cds_start": 5157,
          "cds_end": null,
          "cds_length": 5343,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000644399.1"
        },
        {
          "aa_ref": "HIKRLRQ",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "disruptive_inframe_deletion"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 41,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TSC2",
          "gene_hgnc_id": 12363,
          "hgvs_c": "c.5157_5174delCATCAAGCGGCTCCGCCA",
          "hgvs_p": "p.His1719_Arg1724del",
          "transcript": "ENST00000903287.1",
          "protein_id": "ENSP00000573346.1",
          "transcript_support_level": null,
          "aa_start": 1719,
          "aa_end": null,
          "aa_length": 1780,
          "cds_start": 5157,
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      "dbsnp": "rs137854218",
      "frequency_reference_population": 6.846689e-7,
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      "computational_score_selected": null,
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      "phylop100way_score": 9.727,
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      "acmg_classification": "Pathogenic",
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      "acmg_by_gene": [
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          "criteria": [
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            "PM4",
            "PP3",
            "PP5_Very_Strong"
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          "transcript": "NM_000548.5",
          "gene_symbol": "TSC2",
          "hgnc_id": 12363,
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          "hgvs_p": "p.His1746_Arg1751del"
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      "clinvar_disease": "Hereditary cancer-predisposing syndrome,Lymphangiomyomatosis,Tuberous sclerosis 2,Tuberous sclerosis syndrome,not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:14 LP:1 O:3",
      "phenotype_combined": "Tuberous sclerosis 2|Lymphangiomyomatosis;Tuberous sclerosis syndrome|Tuberous sclerosis syndrome|Hereditary cancer-predisposing syndrome|not provided",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.