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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 16-2496034-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=16&pos=2496034&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "16",
"pos": 2496034,
"ref": "G",
"alt": "T",
"effect": "splice_region_variant",
"transcript": "NM_001199107.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "NM_001199107.2",
"protein_id": "NP_001186036.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 559,
"cds_start": -4,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6611,
"mane_select": "ENST00000646147.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000646147.1",
"protein_id": "ENSP00000494678.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 559,
"cds_start": -4,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6611,
"mane_select": "NM_001199107.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000567020.7",
"protein_id": "ENSP00000454408.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
"cds_end": null,
"cds_length": 1662,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10610,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "NM_001199107.2",
"protein_id": "NP_001186036.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 559,
"cds_start": -4,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6611,
"mane_select": "ENST00000646147.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000646147.1",
"protein_id": "ENSP00000494678.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 559,
"cds_start": -4,
"cds_end": null,
"cds_length": 1680,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6611,
"mane_select": "NM_001199107.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000567020.7",
"protein_id": "ENSP00000454408.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
"cds_end": null,
"cds_length": 1662,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10610,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000260272",
"gene_hgnc_id": null,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000564543.1",
"protein_id": "ENSP00000455547.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 376,
"cds_start": -4,
"cds_end": null,
"cds_length": 1131,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1944,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "NM_020705.3",
"protein_id": "NP_065756.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
"cds_end": null,
"cds_length": 1662,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6593,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000627285.1",
"protein_id": "ENSP00000486121.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
"cds_end": null,
"cds_length": 1662,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4382,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000643767.1",
"protein_id": "ENSP00000494145.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 464,
"cds_start": -4,
"cds_end": null,
"cds_length": 1395,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1560,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000562105.2",
"protein_id": "ENSP00000457896.2",
"transcript_support_level": 3,
"aa_start": null,
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"aa_length": 454,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "XM_017023493.2",
"protein_id": "XP_016878982.1",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"splice_region_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
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"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
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"transcript": "XM_047434388.1",
"protein_id": "XP_047290344.1",
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
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"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
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"transcript": "XM_017023494.2",
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},
{
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"strand": true,
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],
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"exon_count": 8,
"intron_rank": null,
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"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "XM_017023495.2",
"protein_id": "XP_016878984.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"splice_region_variant",
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "n.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000569874.2",
"protein_id": "ENSP00000455005.2",
"transcript_support_level": 5,
"aa_start": null,
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
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"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "NM_020705.3",
"protein_id": "NP_065756.1",
"transcript_support_level": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000627285.1",
"protein_id": "ENSP00000486121.1",
"transcript_support_level": 5,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000643767.1",
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},
{
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],
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"exon_count": 7,
"intron_rank": null,
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"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "ENST00000562105.2",
"protein_id": "ENSP00000457896.2",
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
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"intron_rank": null,
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"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "n.-115G>T",
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"transcript": "ENST00000569874.2",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "XM_017023493.2",
"protein_id": "XP_016878982.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TBC1D24",
"gene_hgnc_id": 29203,
"hgvs_c": "c.-115G>T",
"hgvs_p": null,
"transcript": "XM_047434388.1",
"protein_id": "XP_047290344.1",
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},
{
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},
{
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},
{
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"intron_variant"
],
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}
],
"gene_symbol": "TBC1D24",
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"dbsnp": "rs1280271387",
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"hom_count_reference_population": 0,
"allele_count_reference_population": 3,
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"gnomad_genomes_af": 0.00000657082,
"gnomad_exomes_ac": 2,
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"computational_score_selected": -0.8600000143051147,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.2759999930858612,
"splice_prediction_selected": "Benign",
"splice_source_selected": "dbscSNV1_RF",
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"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.86,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.668,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.07,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": 0.0240111937923169,
"dbscsnv_ada_prediction": "Benign",
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_001199107.2",
"gene_symbol": "TBC1D24",
"hgnc_id": 29203,
"effects": [
"splice_region_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.-115G>T",
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},
{
"score": -2,
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"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000564543.1",
"gene_symbol": "ENSG00000260272",
"hgnc_id": null,
"effects": [
"5_prime_UTR_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.-115G>T",
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}
],
"clinvar_disease": "Familial infantile myoclonic epilepsy",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "Familial infantile myoclonic epilepsy",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}